Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr3 1 CH_asa_818 9 17 0.000644869
Arabidopsis thaliana Chr5 1 CH_ath_415 14 64 0.000704496
Saccharum spontaneum Chr2B 1 CH_ssp_962 8 9 0.000355312
Triticum turgidum chr2B 1 CH_ttu_325 19 48 0.00000210094
Allium sativum chr3 2 CH_asa_818 9 17 0.000644869
Arabidopsis thaliana Chr5 2 CH_ath_415 14 64 0.000704496
Saccharum spontaneum Chr2B 2 CH_ssp_962 8 9 0.000355312
Triticum turgidum chr2B 2 CH_ttu_325 19 48 0.00000210094

Available child term results

Ontology identifier Description Number of clusters
15.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes 4
15.1.1.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic components.subunit 1 2
15.1.1.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic components.subunit 2 2
15.1.2.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 1 8
15.1.3.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 1 2
15.1.3.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 2 2
15.1.5.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic components.subunit 1 4
15.1.6.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 3 2
15.1.6.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 4 8
15.1.6.3 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 5 18
15.1.6.4 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 6 4
15.1.6.5 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 7 22
15.1.6.6 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 8 6
15.1.6.7 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 9 2
15.1.6.8 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 10 4
15.1.6.9 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 11 8
15.2.1 RNA biosynthesis.RNA polymerase I-dependent transcription.basal transcription factor (TFIa/RRN3) 2
15.2.2 RNA biosynthesis.RNA polymerase I-dependent transcription.transcription initiation factor (BRP1) 4
15.2.3 RNA biosynthesis.RNA polymerase I-dependent transcription.transcription initiation factor (CCG/MEE12) 12
15.2.4 RNA biosynthesis.RNA polymerase I-dependent transcription.CCG-interacting transcriptional regulator (CBP) 4
15.2.5.1 RNA biosynthesis.RNA polymerase I-dependent transcription.TFIf basal transcription factor heterodimer.small subunit 4
15.2.5.2 RNA biosynthesis.RNA polymerase I-dependent transcription.TFIf basal transcription factor heterodimer.large subunit 4
15.2.6 RNA biosynthesis.RNA polymerase I-dependent transcription.transcription termination factor (TTF1) 6
15.3 RNA biosynthesis.RNA polymerase II-dependent transcription 4
15.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import 4
15.3.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.assembly factor (RPAP3) 6
15.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.nuclear import factor (RIMA) 2
15.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation 2
15.3.2.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.CTDK-I protein kinase complex.T-class cyclin regulatory component 6
15.3.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-I phosphatase 8
15.3.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-II phosphatase 8
15.3.3.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIa basal transcription factor heterodimer.large subunit 20
15.3.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIa basal transcription factor heterodimer.small subunit 8
15.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb) 2
15.3.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer 4
15.3.3.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer.subunit alpha 14
15.3.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer.subunit beta 6
15.3.3.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit alpha 6
15.3.3.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta 16
15.3.3.5.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL2/XPB 4
15.3.3.5.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB1 8
15.3.3.5.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB2 8
15.3.3.5.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB4 2
15.3.3.5.1.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB5 10
15.3.3.5.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.CAK kinase module.cyclin-dependent kinase component 4
15.3.3.5.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.CAK kinase module.scaffolding component TFB3 2
15.3.3.6.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.NC2 regulator heterodimer.component alpha 4
15.3.3.6.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.NC2 regulator heterodimer.component beta 4
15.3.3.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex 2
15.3.3.7.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC1 2
15.3.3.7.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC4 4
15.3.4.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF5 10
15.3.4.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF6 4
15.3.4.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF9 16
15.3.4.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.TATA-box-binding component 12
15.3.4.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component HAF/TAF1 2
15.3.4.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF2 6
15.3.4.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF4 10
15.3.4.2.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF7 4
15.3.4.2.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF8 2
15.3.4.2.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF11 2
15.3.4.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA2 2
15.3.4.3.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA3 4
15.3.4.3.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component SGF29 6
15.3.4.3.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.DUB histone deubiquitinating module.component SGF11 2
15.3.4.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module 2
15.3.4.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component ADA1 10
15.3.4.3.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component SPT20/ADA5 8
15.3.4.3.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component HAF/TAF1 26
15.3.4.3.3.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component SPT3/TAF13 2
15.3.4.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.component CHR5 2
15.3.4.4.1.10 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED30 2
15.3.4.4.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED8 6
15.3.4.4.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED11 6
15.3.4.4.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED17 4
15.3.4.4.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED18 4
15.3.4.4.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED19 6
15.3.4.4.1.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED20 6
15.3.4.4.1.8 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED22 2
15.3.4.4.1.9 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED28 2
15.3.4.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module 2
15.3.4.4.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED4 4
15.3.4.4.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED7 6
15.3.4.4.2.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED21 4
15.3.4.4.2.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED31 2
15.3.4.4.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED2/MED29/MED32 6
15.3.4.4.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED3/MED27 4
15.3.4.4.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED5/MED24/MED33 14
15.3.4.4.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED14 8
15.3.4.4.3.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED15 32
15.3.4.4.3.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED16 4
15.3.4.4.3.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED23 4
15.3.4.4.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED12 8
15.3.4.4.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED13 8
15.3.4.4.4.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component CycC 2
15.3.4.4.5.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED25 12
15.3.4.4.5.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED26 4
15.3.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation 2
15.3.5.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP4/LEO1 2
15.3.5.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP5/RTF1 4
15.3.5.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP6/CTR9 8
15.3.5.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP1 2
15.3.5.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP2 2
15.3.5.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP3 8
15.3.5.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP4 12
15.3.5.2.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP5 6
15.3.5.2.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.associated regulatory component DRL1 2
15.3.5.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5 4
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6 6
15.3.5.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component IWS1 10
15.3.5.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.regulatory protein (MINIYO) 4
15.3.6.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) 2
15.3.6.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.R-loop reader protein (ALBA1/2) 8
15.3.6.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.ribonuclease (RNH1) 6
15.3.6.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b) 2
15.3.6.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.plastidial DNA:RNA hybrid helicase (RHON1) 4
15.4 RNA biosynthesis.RNA polymerase III-dependent transcription 4
15.4.2 RNA biosynthesis.RNA polymerase III-dependent transcription.transcription factor (TFIIIa) 20
15.4.3.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.component BRF1 2
15.4.3.2 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.component BDP1 6
15.4.4.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC1/Tau95 10
15.4.4.3 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.promotor-binding component TFC3 22
15.4.4.4 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC4/Tau131 14
15.4.4.5 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC7/Tau55 4
15.4.5.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIe transcription factor complex.component RPC82 8
15.4.5.2 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIe transcription factor complex.component RPC34 26
15.4.6 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer 2
15.4.6.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer.small subunit 16
15.4.6.2 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer.large subunit 4
15.4.7 RNA biosynthesis.RNA polymerase III-dependent transcription.regulatory protein (MAF1) 6
15.5 RNA biosynthesis.transcriptional regulation 8
15.5.1.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-DBB) 2
15.5.1.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-CO) 2
15.5.1.3.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (A/B-GATA) 8
15.5.1.3.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (C-GATA) 12
15.5.1.3.3 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (D-GATA) 12
15.5.1.5 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) 46
15.5.11 RNA biosynthesis.transcriptional regulation.transcription factor (EIL) 6
15.5.12 RNA biosynthesis.transcriptional regulation.transcription factor (GRAS) 174
15.5.13 RNA biosynthesis.transcriptional regulation.transcription factor (HSF) 12
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) 126
15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) 116
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF) 28
15.5.17 RNA biosynthesis.transcriptional regulation.transcription factor (NAC) 162
15.5.18 RNA biosynthesis.transcriptional regulation.transcription factor (SBP) 18
15.5.19 RNA biosynthesis.transcriptional regulation.transcription factor (TCP) 10
15.5.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily 4
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB) 128
15.5.2.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related) 116
15.5.2.3 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (GARP) 10
15.5.2.4 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (REVEILLE) 4
15.5.20 RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix) 6
15.5.21 RNA biosynthesis.transcriptional regulation.transcription factor (TUB) 2
15.5.22.1 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.transcription factor (WRKY) 250
15.5.22.2 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.WRKY-regulatory transcriptional co-factor (VQ) 2
15.5.24 RNA biosynthesis.transcriptional regulation.transcription factor (AS2/LOB) 34
15.5.26 RNA biosynthesis.transcriptional regulation.transcription factor (CAMTA) 8
15.5.27 RNA biosynthesis.transcriptional regulation.transcription factor (ELF3) 14
15.5.28 RNA biosynthesis.transcriptional regulation.transcription factor (GeBP) 6
15.5.29 RNA biosynthesis.transcriptional regulation.transcription factor (PHD) 4
15.5.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily 6
15.5.3.1 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II) 26
15.5.3.10 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PINTOX) 2
15.5.3.11 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (NDX) 2
15.5.3.12 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD) 18
15.5.3.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV) 62
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX) 12
15.5.3.5 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (BEL) 2
15.5.3.6 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (WOX) 14
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD) 6
15.5.3.9 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (LD) 6
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH) 102
15.5.31 RNA biosynthesis.transcriptional regulation.transcription factor (S1Fa) 12
15.5.32 RNA biosynthesis.transcriptional regulation.transcription factor (BBR/BPC) 24
15.5.33 RNA biosynthesis.transcriptional regulation.transcription factor (BSD) 4
15.5.34 RNA biosynthesis.transcriptional regulation.transcription factor (VOZ) 2
15.5.35 RNA biosynthesis.transcriptional regulation.transcription factor (OFP) 12
15.5.37 RNA biosynthesis.transcriptional regulation.transcription factor (BZR) 2
15.5.38 RNA biosynthesis.transcriptional regulation.transcription factor (LFY) 4
15.5.39 RNA biosynthesis.transcriptional regulation.transcription factor (LIM) 4
15.5.4 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily 10
15.5.4.1 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (bZIP) 4
15.5.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (DOG) 8
15.5.4.3 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (HY5) 2
15.5.4.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcriptional co-activator (BOP) 4
15.5.40 RNA biosynthesis.transcriptional regulation.transcription factor (HRT) 6
15.5.41 RNA biosynthesis.transcriptional regulation.transcription factor (PLATZ) 38
15.5.42 RNA biosynthesis.transcriptional regulation.transcription factor (ULT) 4
15.5.43 RNA biosynthesis.transcriptional regulation.transcription factor (TIFY) 102
15.5.44 RNA biosynthesis.transcriptional regulation.transcription factor (FRS/FRF) 16
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS) 14
15.5.46 RNA biosynthesis.transcriptional regulation.transcription factor (SAP) 2
15.5.47 RNA biosynthesis.transcriptional regulation.transcription factor (HUA2) 6
15.5.49 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex 2
15.5.49.1 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YA 6
15.5.49.2 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB 26
15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC 28
15.5.5.1 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF) 10
15.5.5.2 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (REM) 76
15.5.5.3 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (RAV/NGATHA) 16
15.5.5.4 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-VAL) 2
15.5.5.5 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-ABI3) 14
15.5.50.1 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.component GRF 4
15.5.50.2 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.cofactor component GIF 2
15.5.51 RNA biosynthesis.transcriptional regulation.transcriptional repression 8
15.5.51.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (ECAP) 4
15.5.51.3 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (AFP/NINJA) 12
15.5.51.4 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (TIE/SPL) 4
15.5.51.5 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (NF-X1) 2
15.5.51.6.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.component LUG/LUH 30
15.5.51.6.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.adapter component SEU/SLK 20
15.5.51.7.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component PEAPOD 2
15.5.52 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (BET/GTE) 10
15.5.53 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (P15) 6
15.5.54 RNA biosynthesis.transcriptional regulation.transcriptional co-regulator (Pirin) 18
15.5.6 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily 2
15.5.6.1 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (RKD) 16
15.5.6.2 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (NLP) 14
15.5.7 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily 42
15.5.7.1 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF) 82
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB) 60
15.5.7.3 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2) 8
15.5.7.5 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2-RAV) 46
15.5.8.2 RNA biosynthesis.transcriptional regulation.AHL transcription factor superfamily.clade-B transcription factor (AHL) 6
15.5.9 RNA biosynthesis.transcriptional regulation.transcription factor (TCX/CPP) 2
15.6 RNA biosynthesis.organelle machinery 8
15.6.1.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) 16
15.6.1.2.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components 20
15.6.1.2.2.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP1/TAC3 4
15.6.1.2.2.10 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP10/TrxZ 2
15.6.1.2.2.11 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP11/MURE 2
15.6.1.2.2.12 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component FLN2 2
15.6.1.2.2.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP3/TAC10 2
15.6.1.2.2.4 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP4/FSD3 2
15.6.1.2.2.5 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP5/TAC12 6
15.6.1.2.2.7 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP7/TAC14 8
15.6.1.2.2.8 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP8/TAC6 8
15.6.1.2.2.9 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP9/FSD2 4
15.6.1.2.3.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC5 2
15.6.1.2.3.10 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.FSD2-interacting component PRDA1 6
15.6.1.2.3.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC9 2
15.6.1.2.3.4 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC13 4
15.6.1.2.3.7 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC17 2
15.6.1.2.3.8 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC18 2
15.6.1.2.3.9 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component PRIN2 4
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) 8
15.6.2.2 RNA biosynthesis.organelle machinery.transcriptional regulation.transcription factor (mTERF) 272

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001