Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED15

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr1 1 CH_ath_325 2 3 0.000257837
Brachypodium distachyon Bd5 1 CH_bdi_347 2 2 0.000925012
Brachypodium distachyon Bd4 1 CH_bdi_348 2 2 0.000925012
Calamus simplicifolius scaffold17 1 CH_calsi_306 2 3 0.000604155
Ceratophyllum demersum 2 1 CH_cde_213 2 2 0.000473878
Digitaria exilis Dexi_CM05836_chr07B 1 CH_dex_488 2 2 0.000200521
Eragrostis curvula Contig44 1 CH_ecu_236 3 4 0.0000000360788
Miscanthus sinensis Chr12 1 CH_msi_358 2 2 0.0000965966
Oryza sativa Kitaake Chr12 1 CH_osak_399 2 2 0.000337714
Oryza sativa ssp. japonica chr12 1 CH_osa_305 2 2 0.000316874
Populus trichocarpa Chr03 1 CH_ptr_552 3 32 0.000867071
Secale cereale GWHASIY00000006 1 CH_sce_350 3 5 0.00000373023
Secale cereale GWHASIY00000002 1 CH_sce_351 3 5 0.00000373023
Sequoiadendron giganteum chr8 1 CH_sgi_556 3 9 0.000000298982
Setaria italica scaffold_7 1 CH_sit_342 2 2 0.00017413
Setaria viridis Chr_07 1 CH_svi_480 2 4 0.00093913
Arabidopsis thaliana Chr1 2 CH_ath_325 2 3 0.000257837
Brachypodium distachyon Bd5 2 CH_bdi_347 2 2 0.000925012
Brachypodium distachyon Bd4 2 CH_bdi_348 2 2 0.000925012
Calamus simplicifolius scaffold17 2 CH_calsi_306 2 3 0.000604155
Ceratophyllum demersum 2 2 CH_cde_213 2 2 0.000473878
Digitaria exilis Dexi_CM05836_chr07B 2 CH_dex_488 2 2 0.000200521
Eragrostis curvula Contig44 2 CH_ecu_236 3 4 0.0000000360788
Miscanthus sinensis Chr12 2 CH_msi_358 2 2 0.0000965966
Oryza sativa Kitaake Chr12 2 CH_osak_399 2 2 0.000337714
Oryza sativa ssp. japonica chr12 2 CH_osa_305 2 2 0.000316874
Populus trichocarpa Chr03 2 CH_ptr_552 3 32 0.000867071
Secale cereale GWHASIY00000006 2 CH_sce_350 3 5 0.00000373023
Secale cereale GWHASIY00000002 2 CH_sce_351 3 5 0.00000373023
Sequoiadendron giganteum chr8 2 CH_sgi_556 3 9 0.000000298982
Setaria italica scaffold_7 2 CH_sit_342 2 2 0.00017413
Setaria viridis Chr_07 2 CH_svi_480 2 4 0.00093913

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001