Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr8 | 1 | CH_asa_329 | 3 | 3 | 0.0000160851 |
| Allium sativum | chr8 | 1 | CH_asa_330 | 3 | 3 | 0.0000160851 |
| Aegilops tauschii | 1D | 1 | CH_ata_12 | 8 | 9 | 1.49695e-18 |
| Aegilops tauschii | 7D | 1 | CH_ata_213 | 3 | 3 | 0.0000803822 |
| Aegilops tauschii | 1D | 1 | CH_ata_26 | 6 | 6 | 0.000000000000132648 |
| Aegilops tauschii | 5D | 1 | CH_ata_44 | 5 | 5 | 0.000000000114619 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_87 | 4 | 4 | 0.00000000580254 |
| Amborella trichopoda | AmTr_v1.0_scaffold00085 | 1 | CH_atr_137 | 3 | 3 | 0.0000107919 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_165 | 5 | 5 | 0.000000000268367 |
| Digitaria exilis | Dexi_CM05836_chr03B | 1 | CH_dex_290 | 4 | 7 | 0.00000299654 |
| Eragrostis curvula | Contig313 | 1 | CH_ecu_819 | 4 | 33 | 0.000867239 |
| Hordeum vulgare | chr1H | 1 | CH_hvu_288 | 3 | 3 | 0.0000514501 |
| Hordeum vulgare | chr1H | 1 | CH_hvu_29 | 7 | 10 | 0.00000000000000487795 |
| Miscanthus sinensis | Chr16 | 1 | CH_msi_194 | 4 | 5 | 0.000000832303 |
| Miscanthus sinensis | Chr18 | 1 | CH_msi_260 | 4 | 7 | 0.00000581438 |
| Oryza alta | GWHAZTO00000006 | 1 | CH_oal_351 | 3 | 3 | 0.0000500454 |
| Oryza alta | GWHAZTO00000017 | 1 | CH_oal_352 | 3 | 3 | 0.0000500454 |
| Oryza brachyantha | 5 | 1 | CH_obr_151 | 3 | 3 | 0.0000382155 |
| Oryza brachyantha | 6 | 1 | CH_obr_152 | 3 | 3 | 0.0000382155 |
| Oryza sativa Kitaake | Chr6 | 1 | CH_osak_84 | 5 | 5 | 0.0000000000640453 |
| Sorghum bicolor | Chr09 | 1 | CH_sbi_17 | 9 | 12 | 1.93435e-19 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_140 | 5 | 6 | 0.0000000015955 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_163 | 5 | 7 | 0.00000000557775 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_389 | 4 | 8 | 0.0000133585 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_516 | 5 | 32 | 0.000051956 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_570 | 3 | 3 | 0.000135819 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_571 | 3 | 3 | 0.000135819 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_238 | 5 | 5 | 0.00000000000111249 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_655 | 3 | 3 | 0.00000548214 |
| Saccharum spontaneum | Chr8B | 1 | CH_ssp_295 | 4 | 4 | 0.0000004211 |
| Saccharum spontaneum | Chr7D | 1 | CH_ssp_397 | 4 | 5 | 0.000002103 |
| Saccharum spontaneum | Chr7B | 1 | CH_ssp_45 | 8 | 20 | 0.000000000000230579 |
| Saccharum spontaneum | Chr7D | 1 | CH_ssp_625 | 4 | 9 | 0.0000527448 |
| Setaria viridis | Chr_02 | 1 | CH_svi_386 | 3 | 4 | 0.000282291 |
| Triticum aestivum | Chr1D | 1 | CH_tae_111 | 7 | 7 | 0.00000000000000150479 |
| Triticum aestivum | Chr1A | 1 | CH_tae_112 | 7 | 7 | 0.00000000000000150479 |
| Triticum aestivum | Chr7A | 1 | CH_tae_336 | 5 | 5 | 0.000000000729955 |
| Triticum aestivum | Chr5A | 1 | CH_tae_337 | 5 | 5 | 0.000000000729955 |
| Triticum aestivum | Chr1B | 1 | CH_tae_338 | 5 | 5 | 0.000000000729955 |
| Triticum aestivum | Chr1B | 1 | CH_tae_35 | 10 | 10 | 4.24003e-24 |
| Triticum aestivum | Chr7D | 1 | CH_tae_517 | 5 | 9 | 0.0000000915301 |
| Triticum aestivum | Chr1D | 1 | CH_tae_626 | 4 | 4 | 0.000000503485 |
| Triticum aestivum | Chr5B | 1 | CH_tae_627 | 4 | 4 | 0.000000503485 |
| Triticum aestivum | Chr1A | 1 | CH_tae_628 | 4 | 4 | 0.000000503485 |
| Triticum aestivum | Chr5D | 1 | CH_tae_629 | 4 | 4 | 0.000000503485 |
| Triticum dicoccoides | 1A | 1 | CH_tdi_121 | 5 | 6 | 0.00000000213363 |
| Triticum dicoccoides | 1B | 1 | CH_tdi_122 | 5 | 6 | 0.00000000213363 |
| Triticum dicoccoides | 1B | 1 | CH_tdi_35 | 7 | 7 | 6.42422e-16 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_467 | 3 | 3 | 0.000188862 |
| Triticum dicoccoides | 7A | 1 | CH_tdi_595 | 3 | 4 | 0.000754654 |
| Triticum dicoccoides | 1A | 1 | CH_tdi_65 | 6 | 6 | 0.000000000000480881 |
| Triticum turgidum | chr1B | 1 | CH_ttu_15 | 9 | 9 | 9.11703e-22 |
| Triticum turgidum | chr7A | 1 | CH_ttu_240 | 4 | 5 | 0.000000234022 |
| Triticum turgidum | chr1A | 1 | CH_ttu_241 | 4 | 4 | 0.000000234022 |
| Triticum turgidum | chr1B | 1 | CH_ttu_242 | 4 | 4 | 0.000000234022 |
| Triticum turgidum | chr5B | 1 | CH_ttu_536 | 3 | 3 | 0.00017213 |
| Triticum turgidum | chr1A | 1 | CH_ttu_71 | 6 | 6 | 0.000000000000417789 |
| Zea mays B73 | 10 | 1 | CH_zma_213 | 3 | 4 | 0.000288752 |
| Allium sativum | chr8 | 2 | CH_asa_329 | 3 | 3 | 0.0000160851 |
| Allium sativum | chr8 | 2 | CH_asa_330 | 3 | 3 | 0.0000160851 |
| Aegilops tauschii | 1D | 2 | CH_ata_12 | 8 | 9 | 1.49695e-18 |
| Aegilops tauschii | 7D | 2 | CH_ata_213 | 3 | 3 | 0.0000803822 |
| Aegilops tauschii | 1D | 2 | CH_ata_26 | 6 | 6 | 0.000000000000132648 |
| Aegilops tauschii | 5D | 2 | CH_ata_44 | 5 | 5 | 0.000000000114619 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_87 | 4 | 4 | 0.00000000580254 |
| Amborella trichopoda | AmTr_v1.0_scaffold00085 | 2 | CH_atr_137 | 3 | 3 | 0.0000107919 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_165 | 5 | 5 | 0.000000000268367 |
| Digitaria exilis | Dexi_CM05836_chr03B | 2 | CH_dex_290 | 4 | 7 | 0.00000299654 |
| Eragrostis curvula | Contig313 | 2 | CH_ecu_819 | 4 | 33 | 0.000867239 |
| Hordeum vulgare | chr1H | 2 | CH_hvu_288 | 3 | 3 | 0.0000514501 |
| Hordeum vulgare | chr1H | 2 | CH_hvu_29 | 7 | 10 | 0.00000000000000487795 |
| Miscanthus sinensis | Chr16 | 2 | CH_msi_194 | 4 | 5 | 0.000000832303 |
| Miscanthus sinensis | Chr18 | 2 | CH_msi_260 | 4 | 7 | 0.00000581438 |
| Oryza alta | GWHAZTO00000006 | 2 | CH_oal_351 | 3 | 3 | 0.0000500454 |
| Oryza alta | GWHAZTO00000017 | 2 | CH_oal_352 | 3 | 3 | 0.0000500454 |
| Oryza brachyantha | 5 | 2 | CH_obr_151 | 3 | 3 | 0.0000382155 |
| Oryza brachyantha | 6 | 2 | CH_obr_152 | 3 | 3 | 0.0000382155 |
| Oryza sativa Kitaake | Chr6 | 2 | CH_osak_84 | 5 | 5 | 0.0000000000640453 |
| Sorghum bicolor | Chr09 | 2 | CH_sbi_17 | 9 | 12 | 1.93435e-19 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_140 | 5 | 6 | 0.0000000015955 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_163 | 5 | 7 | 0.00000000557775 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_389 | 4 | 8 | 0.0000133585 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_516 | 5 | 32 | 0.000051956 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_570 | 3 | 3 | 0.000135819 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_571 | 3 | 3 | 0.000135819 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_238 | 5 | 5 | 0.00000000000111249 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_655 | 3 | 3 | 0.00000548214 |
| Saccharum spontaneum | Chr8B | 2 | CH_ssp_295 | 4 | 4 | 0.0000004211 |
| Saccharum spontaneum | Chr7D | 2 | CH_ssp_397 | 4 | 5 | 0.000002103 |
| Saccharum spontaneum | Chr7B | 2 | CH_ssp_45 | 8 | 20 | 0.000000000000230579 |
| Saccharum spontaneum | Chr7D | 2 | CH_ssp_625 | 4 | 9 | 0.0000527448 |
| Setaria viridis | Chr_02 | 2 | CH_svi_386 | 3 | 4 | 0.000282291 |
| Triticum aestivum | Chr1D | 2 | CH_tae_111 | 7 | 7 | 0.00000000000000150479 |
| Triticum aestivum | Chr1A | 2 | CH_tae_112 | 7 | 7 | 0.00000000000000150479 |
| Triticum aestivum | Chr7A | 2 | CH_tae_336 | 5 | 5 | 0.000000000729955 |
| Triticum aestivum | Chr5A | 2 | CH_tae_337 | 5 | 5 | 0.000000000729955 |
| Triticum aestivum | Chr1B | 2 | CH_tae_338 | 5 | 5 | 0.000000000729955 |
| Triticum aestivum | Chr1B | 2 | CH_tae_35 | 10 | 10 | 4.24003e-24 |
| Triticum aestivum | Chr7D | 2 | CH_tae_517 | 5 | 9 | 0.0000000915301 |
| Triticum aestivum | Chr1D | 2 | CH_tae_626 | 4 | 4 | 0.000000503485 |
| Triticum aestivum | Chr5B | 2 | CH_tae_627 | 4 | 4 | 0.000000503485 |
| Triticum aestivum | Chr1A | 2 | CH_tae_628 | 4 | 4 | 0.000000503485 |
| Triticum aestivum | Chr5D | 2 | CH_tae_629 | 4 | 4 | 0.000000503485 |
| Triticum dicoccoides | 1A | 2 | CH_tdi_121 | 5 | 6 | 0.00000000213363 |
| Triticum dicoccoides | 1B | 2 | CH_tdi_122 | 5 | 6 | 0.00000000213363 |
| Triticum dicoccoides | 1B | 2 | CH_tdi_35 | 7 | 7 | 6.42422e-16 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_467 | 3 | 3 | 0.000188862 |
| Triticum dicoccoides | 7A | 2 | CH_tdi_595 | 3 | 4 | 0.000754654 |
| Triticum dicoccoides | 1A | 2 | CH_tdi_65 | 6 | 6 | 0.000000000000480881 |
| Triticum turgidum | chr1B | 2 | CH_ttu_15 | 9 | 9 | 9.11703e-22 |
| Triticum turgidum | chr7A | 2 | CH_ttu_240 | 4 | 5 | 0.000000234022 |
| Triticum turgidum | chr1A | 2 | CH_ttu_241 | 4 | 4 | 0.000000234022 |
| Triticum turgidum | chr1B | 2 | CH_ttu_242 | 4 | 4 | 0.000000234022 |
| Triticum turgidum | chr5B | 2 | CH_ttu_536 | 3 | 3 | 0.00017213 |
| Triticum turgidum | chr1A | 2 | CH_ttu_71 | 6 | 6 | 0.000000000000417789 |
| Zea mays B73 | 10 | 2 | CH_zma_213 | 3 | 4 | 0.000288752 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |