Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.transcription factor (SBP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_166 2 2 0.000481541
Marchantia polymorpha scaffold_14 1 CH_mpo_124 2 2 0.000662654
Physcomitrium patens Chr16 1 CH_ppa_65 3 5 0.0000160982
Triticum aestivum Chr7A 1 CH_tae_420 4 4 0.00000000721321
Triticum aestivum Chr7D 1 CH_tae_421 4 4 0.00000000721321
Triticum aestivum Chr7B 1 CH_tae_876 3 3 0.0000145505
Triticum dicoccoides 7A 1 CH_tdi_347 3 4 0.0000262161
Triticum turgidum chr7A 1 CH_ttu_167 4 4 0.00000000539494
Triticum turgidum chr7B 1 CH_ttu_402 3 3 0.0000104614
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_166 2 2 0.000481541
Marchantia polymorpha scaffold_14 2 CH_mpo_124 2 2 0.000662654
Physcomitrium patens Chr16 2 CH_ppa_65 3 5 0.0000160982
Triticum aestivum Chr7A 2 CH_tae_420 4 4 0.00000000721321
Triticum aestivum Chr7D 2 CH_tae_421 4 4 0.00000000721321
Triticum aestivum Chr7B 2 CH_tae_876 3 3 0.0000145505
Triticum dicoccoides 7A 2 CH_tdi_347 3 4 0.0000262161
Triticum turgidum chr7A 2 CH_ttu_167 4 4 0.00000000539494
Triticum turgidum chr7B 2 CH_ttu_402 3 3 0.0000104614

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001