Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (GRAS)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 1 | CH_aag_39 | 6 | 66 | 0.00000115679 |
| Aegilops tauschii | 4D | 1 | CH_ata_217 | 3 | 3 | 0.0000902172 |
| Aegilops tauschii | 4D | 1 | CH_ata_35 | 6 | 8 | 0.00000000000470204 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 1 | CH_atr_54 | 5 | 6 | 0.00000000134173 |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_1 | 20 | 32 | 6.63944e-44 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_133 | 8 | 24 | 0.0000000000512261 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_35 | 8 | 8 | 7.20219e-17 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_897 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_898 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_899 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_900 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_901 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000011 | 1 | CH_cpu_902 | 3 | 3 | 0.000942336 |
| Digitaria exilis | Dexi_CM05836_chr08A | 1 | CH_dex_14 | 9 | 9 | 3.37455e-20 |
| Digitaria exilis | Dexi_CM05836_chr08A | 1 | CH_dex_254 | 4 | 4 | 0.00000108532 |
| Digitaria exilis | Dexi_CM05836_chr08B | 1 | CH_dex_3 | 19 | 48 | 1.86667e-34 |
| Digitaria exilis | Dexi_CM05836_chrUA | 1 | CH_dex_37 | 9 | 18 | 0.00000000000000161488 |
| Digitaria exilis | Dexi_CM05836_chr07A | 1 | CH_dex_652 | 3 | 3 | 0.000532357 |
| Digitaria exilis | Dexi_CM05836_chr08B | 1 | CH_dex_653 | 3 | 3 | 0.000532357 |
| Digitaria exilis | Dexi_CM05836_chr07B | 1 | CH_dex_654 | 3 | 3 | 0.000532357 |
| Eragrostis curvula | 2 | 1 | CH_ecu_34 | 8 | 8 | 7.9566e-20 |
| Eragrostis curvula | 2 | 1 | CH_ecu_625 | 4 | 18 | 0.00022432 |
| Glycine max | Gm13 | 1 | CH_gma_128 | 5 | 6 | 0.0000000119509 |
| Glycine max | Gm15 | 1 | CH_gma_209 | 4 | 4 | 0.000000982498 |
| Glycine max | Gm12 | 1 | CH_gma_251 | 4 | 5 | 0.00000490442 |
| Glycine max | Gm11 | 1 | CH_gma_56 | 6 | 6 | 0.00000000000401396 |
| Hordeum vulgare | chr1H | 1 | CH_hvu_300 | 3 | 3 | 0.0000803165 |
| Hordeum vulgare | chr4H | 1 | CH_hvu_51 | 8 | 32 | 0.00000000000130301 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_62 | 5 | 7 | 0.000000000394442 |
| Miscanthus sinensis | Chr01 | 1 | CH_msi_256 | 4 | 5 | 0.00000550414 |
| Miscanthus sinensis | Chr17 | 1 | CH_msi_570 | 3 | 3 | 0.00054354 |
| Miscanthus sinensis | Chr10 | 1 | CH_msi_6 | 12 | 15 | 1.06903e-25 |
| Oryza alta | GWHAZTO00000011 | 1 | CH_oal_13 | 8 | 8 | 2.02149e-19 |
| Oryza alta | GWHAZTO00000023 | 1 | CH_oal_279 | 4 | 7 | 0.00000532249 |
| Oryza alta | GWHAZTO00000024 | 1 | CH_oal_537 | 3 | 3 | 0.000138831 |
| Oryza brachyantha | 11 | 1 | CH_obr_85 | 4 | 4 | 0.000000187251 |
| Oryza sativa ssp. indica | Chr11 | 1 | CH_osaindica_243 | 3 | 3 | 0.0000607712 |
| Oryza sativa Kitaake | Chr12 | 1 | CH_osak_330 | 3 | 3 | 0.000124675 |
| Oryza sativa Kitaake | Chr11 | 1 | CH_osak_99 | 5 | 5 | 0.00000000026191 |
| Oryza sativa ssp. japonica | chr11 | 1 | CH_osa_233 | 3 | 3 | 0.0000820027 |
| Oryza sativa ssp. japonica | chr12 | 1 | CH_osa_234 | 3 | 3 | 0.0000820027 |
| Oropetium thomaeum | Chromosome_5 | 1 | CH_oth_165 | 3 | 3 | 0.0000872609 |
| Phyllostachys edulis | hic_scaffold_1 | 1 | CH_ped_1 | 21 | 26 | 1.0479e-45 |
| Phyllostachys edulis | hic_scaffold_7 | 1 | CH_ped_273 | 4 | 6 | 0.0000401108 |
| Phyllostachys edulis | hic_scaffold_2 | 1 | CH_ped_518 | 3 | 3 | 0.000998623 |
| Panicum hallii | Chr08 | 1 | CH_pha_19 | 8 | 11 | 4.48749e-16 |
| Panicum hallii | Chr03 | 1 | CH_pha_338 | 3 | 3 | 0.000201154 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_126 | 5 | 5 | 0.00000000291581 |
| Populus trichocarpa | Chr09 | 1 | CH_ptr_152 | 5 | 6 | 0.0000000174602 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_2 | 16 | 17 | 1.22595e-37 |
| Sorghum bicolor | Chr09 | 1 | CH_sbi_222 | 4 | 5 | 0.00000503067 |
| Sorghum bicolor | Chr01 | 1 | CH_sbi_237 | 4 | 6 | 0.0000150643 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_92 | 5 | 5 | 0.00000000227696 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_43 | 8 | 14 | 0.000000000000002485 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_652 | 3 | 3 | 0.000148956 |
| Setaria italica | scaffold_3 | 1 | CH_sit_330 | 3 | 3 | 0.000147871 |
| Selaginella moellendorffii | scaffold_5 | 1 | CH_smo_15 | 8 | 16 | 0.00000000000021914 |
| Selaginella moellendorffii | scaffold_33 | 1 | CH_smo_18 | 7 | 12 | 0.00000000000631364 |
| Saccharum spontaneum | Chr6B | 1 | CH_ssp_135 | 5 | 5 | 0.00000000475602 |
| Saccharum spontaneum | Chr7A | 1 | CH_ssp_1350 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr5C | 1 | CH_ssp_1351 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr6D | 1 | CH_ssp_1352 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr6C | 1 | CH_ssp_1353 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr2A | 1 | CH_ssp_1354 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr6C | 1 | CH_ssp_430 | 5 | 12 | 0.00000371824 |
| Saccharum spontaneum | Chr6D | 1 | CH_ssp_46 | 9 | 26 | 0.000000000000330136 |
| Setaria viridis | Chr_03 | 1 | CH_svi_316 | 3 | 3 | 0.000119498 |
| Setaria viridis | Chr_07 | 1 | CH_svi_317 | 3 | 3 | 0.000119498 |
| Setaria viridis | Chr_08 | 1 | CH_svi_433 | 3 | 4 | 0.000477473 |
| Triticum aestivum | Chr4D | 1 | CH_tae_109 | 8 | 11 | 9.68535e-16 |
| Triticum aestivum | Chr5A | 1 | CH_tae_1303 | 3 | 3 | 0.000501742 |
| Triticum aestivum | Chr3B | 1 | CH_tae_1304 | 3 | 3 | 0.000501742 |
| Triticum aestivum | Chr3D | 1 | CH_tae_1305 | 3 | 3 | 0.000501742 |
| Triticum aestivum | Chr4A | 1 | CH_tae_170 | 7 | 9 | 0.000000000000130778 |
| Triticum aestivum | Chr4B | 1 | CH_tae_267 | 6 | 8 | 0.0000000000624992 |
| Triticum aestivum | Chr1D | 1 | CH_tae_434 | 5 | 6 | 0.00000000819355 |
| Triticum aestivum | Chr1B | 1 | CH_tae_663 | 4 | 4 | 0.000000830668 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_480 | 3 | 3 | 0.000262362 |
| Triticum dicoccoides | 4A | 1 | CH_tdi_55 | 7 | 9 | 0.0000000000000504632 |
| Triticum dicoccoides | 4B | 1 | CH_tdi_85 | 6 | 8 | 0.0000000000261807 |
| Triticum turgidum | chr1A | 1 | CH_ttu_168 | 5 | 6 | 0.00000000549547 |
| Triticum turgidum | chr4B | 1 | CH_ttu_269 | 4 | 4 | 0.000000548515 |
| Triticum turgidum | chr3B | 1 | CH_ttu_630 | 3 | 3 | 0.000325 |
| Triticum turgidum | chr3A | 1 | CH_ttu_631 | 3 | 3 | 0.000325 |
| Triticum turgidum | chr4A | 1 | CH_ttu_76 | 6 | 6 | 0.00000000000151936 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_100 | 6 | 34 | 0.00000689894 |
| Zea mays B73 | 4 | 1 | CH_zma_43 | 5 | 5 | 0.00000000148863 |
| Anthoceros agrestis | Sc2ySwM_228 | 2 | CH_aag_39 | 6 | 66 | 0.00000115679 |
| Aegilops tauschii | 4D | 2 | CH_ata_217 | 3 | 3 | 0.0000902172 |
| Aegilops tauschii | 4D | 2 | CH_ata_35 | 6 | 8 | 0.00000000000470204 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 2 | CH_atr_54 | 5 | 6 | 0.00000000134173 |
| Brachypodium distachyon | Bd4 | 2 | CH_bdi_1 | 20 | 32 | 6.63944e-44 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_133 | 8 | 24 | 0.0000000000512261 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_35 | 8 | 8 | 7.20219e-17 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_897 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_898 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_899 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_900 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_901 | 3 | 3 | 0.000942336 |
| Cenchrus purpureus | GWHAORA00000011 | 2 | CH_cpu_902 | 3 | 3 | 0.000942336 |
| Digitaria exilis | Dexi_CM05836_chr08A | 2 | CH_dex_14 | 9 | 9 | 3.37455e-20 |
| Digitaria exilis | Dexi_CM05836_chr08A | 2 | CH_dex_254 | 4 | 4 | 0.00000108532 |
| Digitaria exilis | Dexi_CM05836_chr08B | 2 | CH_dex_3 | 19 | 48 | 1.86667e-34 |
| Digitaria exilis | Dexi_CM05836_chrUA | 2 | CH_dex_37 | 9 | 18 | 0.00000000000000161488 |
| Digitaria exilis | Dexi_CM05836_chr07A | 2 | CH_dex_652 | 3 | 3 | 0.000532357 |
| Digitaria exilis | Dexi_CM05836_chr08B | 2 | CH_dex_653 | 3 | 3 | 0.000532357 |
| Digitaria exilis | Dexi_CM05836_chr07B | 2 | CH_dex_654 | 3 | 3 | 0.000532357 |
| Eragrostis curvula | 2 | 2 | CH_ecu_34 | 8 | 8 | 7.9566e-20 |
| Eragrostis curvula | 2 | 2 | CH_ecu_625 | 4 | 18 | 0.00022432 |
| Glycine max | Gm13 | 2 | CH_gma_128 | 5 | 6 | 0.0000000119509 |
| Glycine max | Gm15 | 2 | CH_gma_209 | 4 | 4 | 0.000000982498 |
| Glycine max | Gm12 | 2 | CH_gma_251 | 4 | 5 | 0.00000490442 |
| Glycine max | Gm11 | 2 | CH_gma_56 | 6 | 6 | 0.00000000000401396 |
| Hordeum vulgare | chr1H | 2 | CH_hvu_300 | 3 | 3 | 0.0000803165 |
| Hordeum vulgare | chr4H | 2 | CH_hvu_51 | 8 | 32 | 0.00000000000130301 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_62 | 5 | 7 | 0.000000000394442 |
| Miscanthus sinensis | Chr01 | 2 | CH_msi_256 | 4 | 5 | 0.00000550414 |
| Miscanthus sinensis | Chr17 | 2 | CH_msi_570 | 3 | 3 | 0.00054354 |
| Miscanthus sinensis | Chr10 | 2 | CH_msi_6 | 12 | 15 | 1.06903e-25 |
| Oryza alta | GWHAZTO00000011 | 2 | CH_oal_13 | 8 | 8 | 2.02149e-19 |
| Oryza alta | GWHAZTO00000023 | 2 | CH_oal_279 | 4 | 7 | 0.00000532249 |
| Oryza alta | GWHAZTO00000024 | 2 | CH_oal_537 | 3 | 3 | 0.000138831 |
| Oryza brachyantha | 11 | 2 | CH_obr_85 | 4 | 4 | 0.000000187251 |
| Oryza sativa ssp. indica | Chr11 | 2 | CH_osaindica_243 | 3 | 3 | 0.0000607712 |
| Oryza sativa Kitaake | Chr12 | 2 | CH_osak_330 | 3 | 3 | 0.000124675 |
| Oryza sativa Kitaake | Chr11 | 2 | CH_osak_99 | 5 | 5 | 0.00000000026191 |
| Oryza sativa ssp. japonica | chr11 | 2 | CH_osa_233 | 3 | 3 | 0.0000820027 |
| Oryza sativa ssp. japonica | chr12 | 2 | CH_osa_234 | 3 | 3 | 0.0000820027 |
| Oropetium thomaeum | Chromosome_5 | 2 | CH_oth_165 | 3 | 3 | 0.0000872609 |
| Phyllostachys edulis | hic_scaffold_1 | 2 | CH_ped_1 | 21 | 26 | 1.0479e-45 |
| Phyllostachys edulis | hic_scaffold_7 | 2 | CH_ped_273 | 4 | 6 | 0.0000401108 |
| Phyllostachys edulis | hic_scaffold_2 | 2 | CH_ped_518 | 3 | 3 | 0.000998623 |
| Panicum hallii | Chr08 | 2 | CH_pha_19 | 8 | 11 | 4.48749e-16 |
| Panicum hallii | Chr03 | 2 | CH_pha_338 | 3 | 3 | 0.000201154 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_126 | 5 | 5 | 0.00000000291581 |
| Populus trichocarpa | Chr09 | 2 | CH_ptr_152 | 5 | 6 | 0.0000000174602 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_2 | 16 | 17 | 1.22595e-37 |
| Sorghum bicolor | Chr09 | 2 | CH_sbi_222 | 4 | 5 | 0.00000503067 |
| Sorghum bicolor | Chr01 | 2 | CH_sbi_237 | 4 | 6 | 0.0000150643 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_92 | 5 | 5 | 0.00000000227696 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_43 | 8 | 14 | 0.000000000000002485 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_652 | 3 | 3 | 0.000148956 |
| Setaria italica | scaffold_3 | 2 | CH_sit_330 | 3 | 3 | 0.000147871 |
| Selaginella moellendorffii | scaffold_5 | 2 | CH_smo_15 | 8 | 16 | 0.00000000000021914 |
| Selaginella moellendorffii | scaffold_33 | 2 | CH_smo_18 | 7 | 12 | 0.00000000000631364 |
| Saccharum spontaneum | Chr6B | 2 | CH_ssp_135 | 5 | 5 | 0.00000000475602 |
| Saccharum spontaneum | Chr7A | 2 | CH_ssp_1350 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr5C | 2 | CH_ssp_1351 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr6D | 2 | CH_ssp_1352 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr6C | 2 | CH_ssp_1353 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr2A | 2 | CH_ssp_1354 | 3 | 3 | 0.000960773 |
| Saccharum spontaneum | Chr6C | 2 | CH_ssp_430 | 5 | 12 | 0.00000371824 |
| Saccharum spontaneum | Chr6D | 2 | CH_ssp_46 | 9 | 26 | 0.000000000000330136 |
| Setaria viridis | Chr_03 | 2 | CH_svi_316 | 3 | 3 | 0.000119498 |
| Setaria viridis | Chr_07 | 2 | CH_svi_317 | 3 | 3 | 0.000119498 |
| Setaria viridis | Chr_08 | 2 | CH_svi_433 | 3 | 4 | 0.000477473 |
| Triticum aestivum | Chr4D | 2 | CH_tae_109 | 8 | 11 | 9.68535e-16 |
| Triticum aestivum | Chr5A | 2 | CH_tae_1303 | 3 | 3 | 0.000501742 |
| Triticum aestivum | Chr3B | 2 | CH_tae_1304 | 3 | 3 | 0.000501742 |
| Triticum aestivum | Chr3D | 2 | CH_tae_1305 | 3 | 3 | 0.000501742 |
| Triticum aestivum | Chr4A | 2 | CH_tae_170 | 7 | 9 | 0.000000000000130778 |
| Triticum aestivum | Chr4B | 2 | CH_tae_267 | 6 | 8 | 0.0000000000624992 |
| Triticum aestivum | Chr1D | 2 | CH_tae_434 | 5 | 6 | 0.00000000819355 |
| Triticum aestivum | Chr1B | 2 | CH_tae_663 | 4 | 4 | 0.000000830668 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_480 | 3 | 3 | 0.000262362 |
| Triticum dicoccoides | 4A | 2 | CH_tdi_55 | 7 | 9 | 0.0000000000000504632 |
| Triticum dicoccoides | 4B | 2 | CH_tdi_85 | 6 | 8 | 0.0000000000261807 |
| Triticum turgidum | chr1A | 2 | CH_ttu_168 | 5 | 6 | 0.00000000549547 |
| Triticum turgidum | chr4B | 2 | CH_ttu_269 | 4 | 4 | 0.000000548515 |
| Triticum turgidum | chr3B | 2 | CH_ttu_630 | 3 | 3 | 0.000325 |
| Triticum turgidum | chr3A | 2 | CH_ttu_631 | 3 | 3 | 0.000325 |
| Triticum turgidum | chr4A | 2 | CH_ttu_76 | 6 | 6 | 0.00000000000151936 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_100 | 6 | 34 | 0.00000689894 |
| Zea mays B73 | 4 | 2 | CH_zma_43 | 5 | 5 | 0.00000000148863 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |