Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr4 1 CH_ath_293 11 36 0.000122406
Oryza brachyantha 5 1 CH_obr_200 7 8 0.0000810312
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_323 19 49 0.000000000218592
Vanilla planifolia CM028161.1 1 CH_vpl_228 14 36 0.000197897
Arabidopsis thaliana Chr4 2 CH_ath_293 11 36 0.000122406
Oryza brachyantha 5 2 CH_obr_200 7 8 0.0000810312
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_323 19 49 0.000000000218592
Vanilla planifolia CM028161.1 2 CH_vpl_228 14 36 0.000197897

Available child term results

Ontology identifier Description Number of clusters
15.5.1.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-DBB) 2
15.5.1.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-CO) 2
15.5.1.3.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (A/B-GATA) 8
15.5.1.3.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (C-GATA) 12
15.5.1.3.3 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (D-GATA) 12
15.5.1.5 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) 46
15.5.11 RNA biosynthesis.transcriptional regulation.transcription factor (EIL) 6
15.5.12 RNA biosynthesis.transcriptional regulation.transcription factor (GRAS) 174
15.5.13 RNA biosynthesis.transcriptional regulation.transcription factor (HSF) 12
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) 126
15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) 116
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF) 28
15.5.17 RNA biosynthesis.transcriptional regulation.transcription factor (NAC) 162
15.5.18 RNA biosynthesis.transcriptional regulation.transcription factor (SBP) 18
15.5.19 RNA biosynthesis.transcriptional regulation.transcription factor (TCP) 10
15.5.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily 4
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB) 128
15.5.2.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related) 116
15.5.2.3 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (GARP) 10
15.5.2.4 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (REVEILLE) 4
15.5.20 RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix) 6
15.5.21 RNA biosynthesis.transcriptional regulation.transcription factor (TUB) 2
15.5.22.1 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.transcription factor (WRKY) 250
15.5.22.2 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.WRKY-regulatory transcriptional co-factor (VQ) 2
15.5.24 RNA biosynthesis.transcriptional regulation.transcription factor (AS2/LOB) 34
15.5.26 RNA biosynthesis.transcriptional regulation.transcription factor (CAMTA) 8
15.5.27 RNA biosynthesis.transcriptional regulation.transcription factor (ELF3) 14
15.5.28 RNA biosynthesis.transcriptional regulation.transcription factor (GeBP) 6
15.5.29 RNA biosynthesis.transcriptional regulation.transcription factor (PHD) 4
15.5.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily 6
15.5.3.1 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II) 26
15.5.3.10 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PINTOX) 2
15.5.3.11 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (NDX) 2
15.5.3.12 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD) 18
15.5.3.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV) 62
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX) 12
15.5.3.5 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (BEL) 2
15.5.3.6 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (WOX) 14
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD) 6
15.5.3.9 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (LD) 6
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH) 102
15.5.31 RNA biosynthesis.transcriptional regulation.transcription factor (S1Fa) 12
15.5.32 RNA biosynthesis.transcriptional regulation.transcription factor (BBR/BPC) 24
15.5.33 RNA biosynthesis.transcriptional regulation.transcription factor (BSD) 4
15.5.34 RNA biosynthesis.transcriptional regulation.transcription factor (VOZ) 2
15.5.35 RNA biosynthesis.transcriptional regulation.transcription factor (OFP) 12
15.5.37 RNA biosynthesis.transcriptional regulation.transcription factor (BZR) 2
15.5.38 RNA biosynthesis.transcriptional regulation.transcription factor (LFY) 4
15.5.39 RNA biosynthesis.transcriptional regulation.transcription factor (LIM) 4
15.5.4 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily 10
15.5.4.1 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (bZIP) 4
15.5.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (DOG) 8
15.5.4.3 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (HY5) 2
15.5.4.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcriptional co-activator (BOP) 4
15.5.40 RNA biosynthesis.transcriptional regulation.transcription factor (HRT) 6
15.5.41 RNA biosynthesis.transcriptional regulation.transcription factor (PLATZ) 38
15.5.42 RNA biosynthesis.transcriptional regulation.transcription factor (ULT) 4
15.5.43 RNA biosynthesis.transcriptional regulation.transcription factor (TIFY) 102
15.5.44 RNA biosynthesis.transcriptional regulation.transcription factor (FRS/FRF) 16
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS) 14
15.5.46 RNA biosynthesis.transcriptional regulation.transcription factor (SAP) 2
15.5.47 RNA biosynthesis.transcriptional regulation.transcription factor (HUA2) 6
15.5.49 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex 2
15.5.49.1 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YA 6
15.5.49.2 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB 26
15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC 28
15.5.5.1 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF) 10
15.5.5.2 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (REM) 76
15.5.5.3 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (RAV/NGATHA) 16
15.5.5.4 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-VAL) 2
15.5.5.5 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-ABI3) 14
15.5.50.1 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.component GRF 4
15.5.50.2 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.cofactor component GIF 2
15.5.51 RNA biosynthesis.transcriptional regulation.transcriptional repression 8
15.5.51.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (ECAP) 4
15.5.51.3 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (AFP/NINJA) 12
15.5.51.4 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (TIE/SPL) 4
15.5.51.5 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (NF-X1) 2
15.5.51.6.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.component LUG/LUH 30
15.5.51.6.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.adapter component SEU/SLK 20
15.5.51.7.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component PEAPOD 2
15.5.52 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (BET/GTE) 10
15.5.53 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (P15) 6
15.5.54 RNA biosynthesis.transcriptional regulation.transcriptional co-regulator (Pirin) 18
15.5.6 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily 2
15.5.6.1 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (RKD) 16
15.5.6.2 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (NLP) 14
15.5.7 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily 42
15.5.7.1 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF) 82
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB) 60
15.5.7.3 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2) 8
15.5.7.5 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2-RAV) 46
15.5.8.2 RNA biosynthesis.transcriptional regulation.AHL transcription factor superfamily.clade-B transcription factor (AHL) 6
15.5.9 RNA biosynthesis.transcriptional regulation.transcription factor (TCX/CPP) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001