Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-ABI3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Glycine max Gm20 1 CH_gma_565 2 2 0.000569336
Oryza alta GWHAZTO00000004 1 CH_oal_779 2 2 0.000725448
Oryza sativa ssp. indica Chr4 1 CH_osaindica_332 2 2 0.000309965
Oryza sativa Kitaake Chr4 1 CH_osak_455 2 2 0.000562857
Oryza sativa ssp. japonica chr04 1 CH_osa_366 2 2 0.000528123
Sequoiadendron giganteum chr7 1 CH_sgi_147 6 10 5.9875e-16
Solanum lycopersicum SL4.0ch06 1 CH_sly_422 2 2 0.000176082
Glycine max Gm20 2 CH_gma_565 2 2 0.000569336
Oryza alta GWHAZTO00000004 2 CH_oal_779 2 2 0.000725448
Oryza sativa ssp. indica Chr4 2 CH_osaindica_332 2 2 0.000309965
Oryza sativa Kitaake Chr4 2 CH_osak_455 2 2 0.000562857
Oryza sativa ssp. japonica chr04 2 CH_osa_366 2 2 0.000528123
Sequoiadendron giganteum chr7 2 CH_sgi_147 6 10 5.9875e-16
Solanum lycopersicum SL4.0ch06 2 CH_sly_422 2 2 0.000176082

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001