Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2-RAV)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr7_1 | 1 | CH_asa_876 | 2 | 2 | 0.000813827 |
| Aegilops tauschii | 3D | 1 | CH_ata_144 | 3 | 5 | 0.0000043633 |
| Aegilops tauschii | 1D | 1 | CH_ata_66 | 4 | 7 | 0.0000000026318 |
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_287 | 2 | 2 | 0.000370005 |
| Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_176 | 3 | 3 | 0.0000000586388 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_94 | 4 | 9 | 0.000000001768 |
| Oryza sativa Kitaake | Chr1 | 1 | CH_osak_413 | 2 | 2 | 0.000337714 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_319 | 2 | 2 | 0.000316874 |
| Oropetium thomaeum | Chromosome_3 | 1 | CH_oth_264 | 2 | 2 | 0.000711845 |
| Panicum hallii | Chr05 | 1 | CH_pha_400 | 2 | 2 | 0.000581108 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_216 | 4 | 11 | 0.0000000933989 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_296 | 3 | 3 | 0.00000113183 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_297 | 3 | 3 | 0.00000113183 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_116 | 6 | 9 | 3.63017e-18 |
| Setaria italica | scaffold_5 | 1 | CH_sit_150 | 3 | 3 | 0.000000176879 |
| Saccharum spontaneum | Chr3C | 1 | CH_ssp_262 | 3 | 3 | 0.000000244211 |
| Setaria viridis | Chr_05 | 1 | CH_svi_414 | 2 | 2 | 0.000313071 |
| Triticum aestivum | Chr1A | 1 | CH_tae_692 | 3 | 3 | 0.00000136477 |
| Triticum aestivum | Chr1B | 1 | CH_tae_797 | 3 | 4 | 0.00000545815 |
| Triticum dicoccoides | 1A | 1 | CH_tdi_216 | 3 | 3 | 0.000000601429 |
| Triticum dicoccoides | 1B | 1 | CH_tdi_260 | 3 | 4 | 0.00000240536 |
| Triticum turgidum | chr3A | 1 | CH_ttu_260 | 3 | 3 | 0.000000419044 |
| Triticum turgidum | chr3B | 1 | CH_ttu_359 | 3 | 5 | 0.00000418932 |
| Allium sativum | chr7_1 | 2 | CH_asa_876 | 2 | 2 | 0.000813827 |
| Aegilops tauschii | 3D | 2 | CH_ata_144 | 3 | 5 | 0.0000043633 |
| Aegilops tauschii | 1D | 2 | CH_ata_66 | 4 | 7 | 0.0000000026318 |
| Brachypodium distachyon | Bd2 | 2 | CH_bdi_287 | 2 | 2 | 0.000370005 |
| Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_176 | 3 | 3 | 0.0000000586388 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_94 | 4 | 9 | 0.000000001768 |
| Oryza sativa Kitaake | Chr1 | 2 | CH_osak_413 | 2 | 2 | 0.000337714 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_319 | 2 | 2 | 0.000316874 |
| Oropetium thomaeum | Chromosome_3 | 2 | CH_oth_264 | 2 | 2 | 0.000711845 |
| Panicum hallii | Chr05 | 2 | CH_pha_400 | 2 | 2 | 0.000581108 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_216 | 4 | 11 | 0.0000000933989 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_296 | 3 | 3 | 0.00000113183 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_297 | 3 | 3 | 0.00000113183 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_116 | 6 | 9 | 3.63017e-18 |
| Setaria italica | scaffold_5 | 2 | CH_sit_150 | 3 | 3 | 0.000000176879 |
| Saccharum spontaneum | Chr3C | 2 | CH_ssp_262 | 3 | 3 | 0.000000244211 |
| Setaria viridis | Chr_05 | 2 | CH_svi_414 | 2 | 2 | 0.000313071 |
| Triticum aestivum | Chr1A | 2 | CH_tae_692 | 3 | 3 | 0.00000136477 |
| Triticum aestivum | Chr1B | 2 | CH_tae_797 | 3 | 4 | 0.00000545815 |
| Triticum dicoccoides | 1A | 2 | CH_tdi_216 | 3 | 3 | 0.000000601429 |
| Triticum dicoccoides | 1B | 2 | CH_tdi_260 | 3 | 4 | 0.00000240536 |
| Triticum turgidum | chr3A | 2 | CH_ttu_260 | 3 | 3 | 0.000000419044 |
| Triticum turgidum | chr3B | 2 | CH_ttu_359 | 3 | 5 | 0.00000418932 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |