Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (NAC)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG13 | 1 | CH_aco_148 | 3 | 3 | 0.000540735 |
| Aegilops tauschii | 2D | 1 | CH_ata_290 | 4 | 9 | 0.000446315 |
| Aegilops tauschii | 2D | 1 | CH_ata_39 | 9 | 31 | 0.0000000000153651 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_126 | 6 | 22 | 0.0000000759115 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_245 | 4 | 9 | 0.0000548626 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_211 | 4 | 6 | 0.0000861967 |
| Cenchrus purpureus | GWHAORA00000011 | 1 | CH_cpu_776 | 4 | 6 | 0.000442431 |
| Eragrostis curvula | 4 | 1 | CH_ecu_181 | 6 | 8 | 0.00000000200843 |
| Eragrostis curvula | 2 | 1 | CH_ecu_196 | 7 | 17 | 0.0000000044666 |
| Eragrostis curvula | 5 | 1 | CH_ecu_630 | 4 | 7 | 0.000229219 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_820 | 5 | 24 | 0.000882611 |
| Eragrostis curvula | Contig713 | 1 | CH_ecu_92 | 11 | 43 | 0.000000000000134402 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_108 | 8 | 36 | 0.00000000678921 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_151 | 6 | 15 | 0.000000147032 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_22 | 12 | 42 | 1.45283e-16 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_332 | 5 | 33 | 0.000256005 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_371 | 5 | 23 | 0.0000668697 |
| Magnolia biondii | Chr06 | 1 | CH_mbi_376 | 5 | 24 | 0.0000843163 |
| Magnolia biondii | Chr08 | 1 | CH_mbi_572 | 3 | 3 | 0.000444312 |
| Marchantia polymorpha | scaffold_35 | 1 | CH_mpo_89 | 3 | 9 | 0.000184055 |
| Oryza alta | GWHAZTO00000019 | 1 | CH_oal_20 | 12 | 42 | 4.71544e-16 |
| Oryza alta | GWHAZTO00000011 | 1 | CH_oal_268 | 5 | 9 | 0.00000302151 |
| Oryza alta | GWHAZTO00000017 | 1 | CH_oal_349 | 5 | 14 | 0.0000474146 |
| Oryza alta | GWHAZTO00000007 | 1 | CH_oal_77 | 8 | 25 | 0.000000000651259 |
| Oryza brachyantha | 11 | 1 | CH_obr_143 | 4 | 5 | 0.0000190992 |
| Oryza sativa ssp. indica | Chr11 | 1 | CH_osaindica_157 | 4 | 4 | 0.00000221683 |
| Oryza sativa Kitaake | Chr11 | 1 | CH_osak_245 | 4 | 4 | 0.00000773773 |
| Oryza sativa ssp. japonica | chr11 | 1 | CH_osa_145 | 4 | 4 | 0.00000153124 |
| Oryza sativa ssp. japonica | chr10 | 1 | CH_osa_371 | 3 | 3 | 0.000616861 |
| Oryza sativa ssp. japonica | chr11 | 1 | CH_osa_372 | 3 | 3 | 0.000616861 |
| Oropetium thomaeum | Chromosome_2 | 1 | CH_oth_102 | 6 | 22 | 0.00000776089 |
| Phyllostachys edulis | hic_scaffold_13 | 1 | CH_ped_145 | 5 | 5 | 0.000000216773 |
| Phyllostachys edulis | hic_scaffold_15 | 1 | CH_ped_166 | 10 | 77 | 0.000000694265 |
| Panicum hallii | Chr03 | 1 | CH_pha_190 | 5 | 9 | 0.00000329262 |
| Populus trichocarpa | Chr14 | 1 | CH_ptr_169 | 5 | 5 | 0.0000000624078 |
| Populus trichocarpa | Chr02 | 1 | CH_ptr_326 | 4 | 5 | 0.0000703119 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_468 | 4 | 7 | 0.00048868 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_379 | 4 | 4 | 0.00000843016 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_407 | 7 | 45 | 0.0000163892 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_434 | 6 | 27 | 0.0000311987 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_453 | 4 | 5 | 0.0000420262 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_46 | 9 | 13 | 0.00000000000000369811 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_561 | 4 | 6 | 0.000125706 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_562 | 4 | 6 | 0.000125706 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_203 | 6 | 6 | 0.000000000000200479 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_204 | 6 | 6 | 0.000000000000200479 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_240 | 6 | 7 | 0.00000000000140186 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_529 | 4 | 4 | 0.000000127395 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_998 | 3 | 3 | 0.0000986786 |
| Setaria italica | scaffold_1 | 1 | CH_sit_128 | 5 | 5 | 0.0000000318065 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_210 | 7 | 45 | 0.0000015954 |
| Selaginella moellendorffii | scaffold_0 | 1 | CH_smo_70 | 5 | 51 | 0.000026429 |
| Saccharum spontaneum | Chr2B | 1 | CH_ssp_741 | 4 | 5 | 0.000124799 |
| Triticum aestivum | Chr7D | 1 | CH_tae_1124 | 5 | 13 | 0.000176751 |
| Triticum aestivum | Chr4A | 1 | CH_tae_177 | 9 | 15 | 0.00000000000020841 |
| Triticum aestivum | Chr2A | 1 | CH_tae_198 | 10 | 26 | 0.000000000000882439 |
| Triticum aestivum | Chr2D | 1 | CH_tae_251 | 9 | 23 | 0.0000000000330238 |
| Triticum aestivum | Chr2A | 1 | CH_tae_328 | 6 | 6 | 0.00000000059051 |
| Triticum aestivum | Chr2A | 1 | CH_tae_488 | 6 | 9 | 0.0000000490713 |
| Triticum aestivum | Chr2D | 1 | CH_tae_489 | 6 | 9 | 0.0000000490713 |
| Triticum aestivum | Chr2B | 1 | CH_tae_536 | 7 | 19 | 0.0000001188 |
| Triticum aestivum | Chr2B | 1 | CH_tae_537 | 6 | 10 | 0.000000122238 |
| Triticum aestivum | Chr7A | 1 | CH_tae_542 | 5 | 5 | 0.000000141234 |
| Triticum aestivum | Chr4B | 1 | CH_tae_664 | 5 | 6 | 0.000000844441 |
| Triticum aestivum | Chr7B | 1 | CH_tae_814 | 8 | 52 | 0.00000655587 |
| Triticum aestivum | Chr5A | 1 | CH_tae_962 | 4 | 4 | 0.0000337041 |
| Triticum aestivum | Chr2D | 1 | CH_tae_963 | 4 | 4 | 0.0000337041 |
| Triticum dicoccoides | 4B | 1 | CH_tdi_181 | 5 | 6 | 0.00000013655 |
| Triticum dicoccoides | 2A | 1 | CH_tdi_182 | 5 | 6 | 0.00000013655 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_19 | 11 | 17 | 2.58349e-19 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_237 | 5 | 8 | 0.00000126772 |
| Triticum dicoccoides | 2A | 1 | CH_tdi_290 | 5 | 10 | 0.00000567455 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_298 | 4 | 4 | 0.00000718374 |
| Triticum dicoccoides | 4A | 1 | CH_tdi_545 | 4 | 8 | 0.000497741 |
| Triticum turgidum | chr2A | 1 | CH_ttu_127 | 8 | 22 | 0.000000000657932 |
| Triticum turgidum | chr2A | 1 | CH_ttu_248 | 5 | 6 | 0.000000266706 |
| Triticum turgidum | chr2A | 1 | CH_ttu_368 | 5 | 9 | 0.00000554953 |
| Triticum turgidum | chr4B | 1 | CH_ttu_476 | 4 | 5 | 0.0000605262 |
| Triticum turgidum | chr7A | 1 | CH_ttu_641 | 6 | 38 | 0.000407112 |
| Triticum turgidum | chr2B | 1 | CH_ttu_670 | 5 | 19 | 0.000496679 |
| Triticum turgidum | chr4A | 1 | CH_ttu_90 | 7 | 9 | 0.0000000000212379 |
| Ananas comosus | LG13 | 2 | CH_aco_148 | 3 | 3 | 0.000540735 |
| Aegilops tauschii | 2D | 2 | CH_ata_290 | 4 | 9 | 0.000446315 |
| Aegilops tauschii | 2D | 2 | CH_ata_39 | 9 | 31 | 0.0000000000153651 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_126 | 6 | 22 | 0.0000000759115 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_245 | 4 | 9 | 0.0000548626 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_211 | 4 | 6 | 0.0000861967 |
| Cenchrus purpureus | GWHAORA00000011 | 2 | CH_cpu_776 | 4 | 6 | 0.000442431 |
| Eragrostis curvula | 4 | 2 | CH_ecu_181 | 6 | 8 | 0.00000000200843 |
| Eragrostis curvula | 2 | 2 | CH_ecu_196 | 7 | 17 | 0.0000000044666 |
| Eragrostis curvula | 5 | 2 | CH_ecu_630 | 4 | 7 | 0.000229219 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_820 | 5 | 24 | 0.000882611 |
| Eragrostis curvula | Contig713 | 2 | CH_ecu_92 | 11 | 43 | 0.000000000000134402 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_108 | 8 | 36 | 0.00000000678921 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_151 | 6 | 15 | 0.000000147032 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_22 | 12 | 42 | 1.45283e-16 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_332 | 5 | 33 | 0.000256005 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_371 | 5 | 23 | 0.0000668697 |
| Magnolia biondii | Chr06 | 2 | CH_mbi_376 | 5 | 24 | 0.0000843163 |
| Magnolia biondii | Chr08 | 2 | CH_mbi_572 | 3 | 3 | 0.000444312 |
| Marchantia polymorpha | scaffold_35 | 2 | CH_mpo_89 | 3 | 9 | 0.000184055 |
| Oryza alta | GWHAZTO00000019 | 2 | CH_oal_20 | 12 | 42 | 4.71544e-16 |
| Oryza alta | GWHAZTO00000011 | 2 | CH_oal_268 | 5 | 9 | 0.00000302151 |
| Oryza alta | GWHAZTO00000017 | 2 | CH_oal_349 | 5 | 14 | 0.0000474146 |
| Oryza alta | GWHAZTO00000007 | 2 | CH_oal_77 | 8 | 25 | 0.000000000651259 |
| Oryza brachyantha | 11 | 2 | CH_obr_143 | 4 | 5 | 0.0000190992 |
| Oryza sativa ssp. indica | Chr11 | 2 | CH_osaindica_157 | 4 | 4 | 0.00000221683 |
| Oryza sativa Kitaake | Chr11 | 2 | CH_osak_245 | 4 | 4 | 0.00000773773 |
| Oryza sativa ssp. japonica | chr11 | 2 | CH_osa_145 | 4 | 4 | 0.00000153124 |
| Oryza sativa ssp. japonica | chr10 | 2 | CH_osa_371 | 3 | 3 | 0.000616861 |
| Oryza sativa ssp. japonica | chr11 | 2 | CH_osa_372 | 3 | 3 | 0.000616861 |
| Oropetium thomaeum | Chromosome_2 | 2 | CH_oth_102 | 6 | 22 | 0.00000776089 |
| Phyllostachys edulis | hic_scaffold_13 | 2 | CH_ped_145 | 5 | 5 | 0.000000216773 |
| Phyllostachys edulis | hic_scaffold_15 | 2 | CH_ped_166 | 10 | 77 | 0.000000694265 |
| Panicum hallii | Chr03 | 2 | CH_pha_190 | 5 | 9 | 0.00000329262 |
| Populus trichocarpa | Chr14 | 2 | CH_ptr_169 | 5 | 5 | 0.0000000624078 |
| Populus trichocarpa | Chr02 | 2 | CH_ptr_326 | 4 | 5 | 0.0000703119 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_468 | 4 | 7 | 0.00048868 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_379 | 4 | 4 | 0.00000843016 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_407 | 7 | 45 | 0.0000163892 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_434 | 6 | 27 | 0.0000311987 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_453 | 4 | 5 | 0.0000420262 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_46 | 9 | 13 | 0.00000000000000369811 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_561 | 4 | 6 | 0.000125706 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_562 | 4 | 6 | 0.000125706 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_203 | 6 | 6 | 0.000000000000200479 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_204 | 6 | 6 | 0.000000000000200479 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_240 | 6 | 7 | 0.00000000000140186 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_529 | 4 | 4 | 0.000000127395 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_998 | 3 | 3 | 0.0000986786 |
| Setaria italica | scaffold_1 | 2 | CH_sit_128 | 5 | 5 | 0.0000000318065 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_210 | 7 | 45 | 0.0000015954 |
| Selaginella moellendorffii | scaffold_0 | 2 | CH_smo_70 | 5 | 51 | 0.000026429 |
| Saccharum spontaneum | Chr2B | 2 | CH_ssp_741 | 4 | 5 | 0.000124799 |
| Triticum aestivum | Chr7D | 2 | CH_tae_1124 | 5 | 13 | 0.000176751 |
| Triticum aestivum | Chr4A | 2 | CH_tae_177 | 9 | 15 | 0.00000000000020841 |
| Triticum aestivum | Chr2A | 2 | CH_tae_198 | 10 | 26 | 0.000000000000882439 |
| Triticum aestivum | Chr2D | 2 | CH_tae_251 | 9 | 23 | 0.0000000000330238 |
| Triticum aestivum | Chr2A | 2 | CH_tae_328 | 6 | 6 | 0.00000000059051 |
| Triticum aestivum | Chr2A | 2 | CH_tae_488 | 6 | 9 | 0.0000000490713 |
| Triticum aestivum | Chr2D | 2 | CH_tae_489 | 6 | 9 | 0.0000000490713 |
| Triticum aestivum | Chr2B | 2 | CH_tae_536 | 7 | 19 | 0.0000001188 |
| Triticum aestivum | Chr2B | 2 | CH_tae_537 | 6 | 10 | 0.000000122238 |
| Triticum aestivum | Chr7A | 2 | CH_tae_542 | 5 | 5 | 0.000000141234 |
| Triticum aestivum | Chr4B | 2 | CH_tae_664 | 5 | 6 | 0.000000844441 |
| Triticum aestivum | Chr7B | 2 | CH_tae_814 | 8 | 52 | 0.00000655587 |
| Triticum aestivum | Chr5A | 2 | CH_tae_962 | 4 | 4 | 0.0000337041 |
| Triticum aestivum | Chr2D | 2 | CH_tae_963 | 4 | 4 | 0.0000337041 |
| Triticum dicoccoides | 4B | 2 | CH_tdi_181 | 5 | 6 | 0.00000013655 |
| Triticum dicoccoides | 2A | 2 | CH_tdi_182 | 5 | 6 | 0.00000013655 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_19 | 11 | 17 | 2.58349e-19 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_237 | 5 | 8 | 0.00000126772 |
| Triticum dicoccoides | 2A | 2 | CH_tdi_290 | 5 | 10 | 0.00000567455 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_298 | 4 | 4 | 0.00000718374 |
| Triticum dicoccoides | 4A | 2 | CH_tdi_545 | 4 | 8 | 0.000497741 |
| Triticum turgidum | chr2A | 2 | CH_ttu_127 | 8 | 22 | 0.000000000657932 |
| Triticum turgidum | chr2A | 2 | CH_ttu_248 | 5 | 6 | 0.000000266706 |
| Triticum turgidum | chr2A | 2 | CH_ttu_368 | 5 | 9 | 0.00000554953 |
| Triticum turgidum | chr4B | 2 | CH_ttu_476 | 4 | 5 | 0.0000605262 |
| Triticum turgidum | chr7A | 2 | CH_ttu_641 | 6 | 38 | 0.000407112 |
| Triticum turgidum | chr2B | 2 | CH_ttu_670 | 5 | 19 | 0.000496679 |
| Triticum turgidum | chr4A | 2 | CH_ttu_90 | 7 | 9 | 0.0000000000212379 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |