Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana ChrC 1 CH_ath_83 3 3 0.00000000492473
Brachypodium distachyon Bd1 1 CH_bdi_102 3 3 0.000000319452
Cenchrus purpureus GWHAORA00000002 1 CH_cpu_821 2 3 0.000556429
Lolium perenne Lp_chr1_0 1 CH_lpe_212 2 6 0.0000321425
Oryza sativa Kitaake Chr1 1 CH_osak_425 3 22 0.000408795
Populus trichocarpa Chr13 1 CH_ptr_163 3 3 0.0000000501143
Populus trichocarpa Chr19 1 CH_ptr_486 2 2 0.000578001
Selaginella moellendorffii scaffold_175 1 CH_smo_88 3 35 0.0000854659
Vanilla planifolia JADCNL010000483.1 1 CH_vpl_23 5 52 0.000000000580098
Zostera marina scaffold_70 1 CH_zosmarina_45 3 4 0.0000000559404
Arabidopsis thaliana ChrC 2 CH_ath_83 3 3 0.00000000492473
Brachypodium distachyon Bd1 2 CH_bdi_102 3 3 0.000000319452
Cenchrus purpureus GWHAORA00000002 2 CH_cpu_821 2 3 0.000556429
Lolium perenne Lp_chr1_0 2 CH_lpe_212 2 6 0.0000321425
Oryza sativa Kitaake Chr1 2 CH_osak_425 3 22 0.000408795
Populus trichocarpa Chr13 2 CH_ptr_163 3 3 0.0000000501143
Populus trichocarpa Chr19 2 CH_ptr_486 2 2 0.000578001
Selaginella moellendorffii scaffold_175 2 CH_smo_88 3 35 0.0000854659
Vanilla planifolia JADCNL010000483.1 2 CH_vpl_23 5 52 0.000000000580098
Zostera marina scaffold_70 2 CH_zosmarina_45 3 4 0.0000000559404

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001