Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_03 | 1 | CH_aof_103 | 3 | 4 | 0.0000890815 |
| Allium sativum | chr2 | 1 | CH_asa_670 | 4 | 11 | 0.000316896 |
| Allium sativum | chr1 | 1 | CH_asa_757 | 6 | 70 | 0.000467533 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_154 | 4 | 5 | 0.000000350454 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_287 | 6 | 72 | 0.000106644 |
| Amborella trichopoda | AmTr_v1.0_scaffold00159 | 1 | CH_atr_149 | 3 | 3 | 0.0000566483 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_72 | 3 | 3 | 0.0000559925 |
| Dioscorea dumetorum | contig3 | 1 | CH_ddu_245 | 3 | 3 | 0.000298325 |
| Eragrostis curvula | Contig25 | 1 | CH_ecu_520 | 3 | 3 | 0.0000498355 |
| Elaeis guineensis | EG5.1_Chr13 | 1 | CH_egu_182 | 3 | 3 | 0.000166136 |
| Glycine max | Gm20 | 1 | CH_gma_149 | 5 | 6 | 0.0000000464293 |
| Glycine max | Gm10 | 1 | CH_gma_60 | 7 | 10 | 0.00000000000647873 |
| Glycine max | Gm18 | 1 | CH_gma_81 | 6 | 7 | 0.000000000143922 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_375 | 3 | 3 | 0.00030014 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_76 | 7 | 19 | 0.000000000140958 |
| Lolium perenne | Lp_chr1_0 | 1 | CH_lpe_192 | 4 | 9 | 0.0000136015 |
| Magnolia biondii | Chr10 | 1 | CH_mbi_152 | 6 | 33 | 0.0000000706207 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_382 | 4 | 16 | 0.000110421 |
| Miscanthus sinensis | Chr13 | 1 | CH_msi_273 | 4 | 6 | 0.0000114942 |
| Miscanthus sinensis | Chr03 | 1 | CH_msi_525 | 3 | 3 | 0.000415101 |
| Miscanthus sinensis | Chr09 | 1 | CH_msi_67 | 6 | 8 | 0.0000000000716358 |
| Oryza sativa Kitaake | Chr1 | 1 | CH_osak_392 | 3 | 3 | 0.00030806 |
| Oryza sativa Kitaake | Chr4 | 1 | CH_osak_393 | 3 | 3 | 0.00030806 |
| Phyllostachys edulis | hic_scaffold_22 | 1 | CH_ped_119 | 5 | 7 | 0.0000000505421 |
| Phyllostachys edulis | hic_scaffold_7 | 1 | CH_ped_138 | 5 | 8 | 0.000000134538 |
| Populus trichocarpa | Chr03 | 1 | CH_ptr_134 | 5 | 5 | 0.00000000485103 |
| Populus trichocarpa | Chr07 | 1 | CH_ptr_518 | 3 | 3 | 0.000693657 |
| Sorghum bicolor | Chr02 | 1 | CH_sbi_216 | 4 | 5 | 0.0000040923 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_24 | 8 | 9 | 1.42539e-16 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_179 | 6 | 16 | 0.000000023109 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_352 | 4 | 5 | 0.00000377775 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_766 | 3 | 3 | 0.000377747 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_100 | 9 | 13 | 2.03699e-19 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_1408 | 3 | 5 | 0.000932103 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_149 | 8 | 14 | 7.45609e-16 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_328 | 6 | 13 | 0.000000000304918 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_991 | 3 | 3 | 0.0000933922 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_992 | 3 | 3 | 0.0000933922 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_225 | 4 | 4 | 0.00000337497 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_226 | 4 | 4 | 0.00000337497 |
| Solanum lycopersicum | SL4.0ch04 | 1 | CH_sly_260 | 5 | 14 | 0.000020345 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_373 | 4 | 7 | 0.000117242 |
| Spirodela polyrhiza | pseudo1 | 1 | CH_spo_169 | 4 | 12 | 0.000231083 |
| Spirodela polyrhiza | pseudo20 | 1 | CH_spo_44 | 5 | 6 | 0.00000000592418 |
| Spirodela polyrhiza | pseudo4 | 1 | CH_spo_87 | 4 | 5 | 0.00000236251 |
| Saccharum spontaneum | Chr2B | 1 | CH_ssp_1048 | 3 | 3 | 0.000424927 |
| Saccharum spontaneum | Chr2C | 1 | CH_ssp_512 | 4 | 6 | 0.0000107683 |
| Triticum aestivum | Chr7D | 1 | CH_tae_1008 | 4 | 6 | 0.0000735331 |
| Triticum aestivum | Chr3A | 1 | CH_tae_1118 | 4 | 7 | 0.000171221 |
| Triticum aestivum | Chr6B | 1 | CH_tae_1350 | 4 | 9 | 0.000613842 |
| Triticum aestivum | Chr3B | 1 | CH_tae_159 | 7 | 7 | 0.0000000000000837785 |
| Triticum aestivum | Chr7D | 1 | CH_tae_666 | 6 | 19 | 0.00000086181 |
| Triticum aestivum | Chr7B | 1 | CH_tae_683 | 7 | 39 | 0.00000119925 |
| Triticum aestivum | Chr6D | 1 | CH_tae_801 | 5 | 11 | 0.00000579574 |
| Triticum aestivum | Chr7B | 1 | CH_tae_933 | 4 | 5 | 0.000024562 |
| Triticum dicoccoides | 3A | 1 | CH_tdi_283 | 5 | 17 | 0.00000454627 |
| Triticum turgidum | chr1B | 1 | CH_ttu_332 | 4 | 4 | 0.00000228895 |
| Triticum turgidum | chr7B | 1 | CH_ttu_333 | 4 | 4 | 0.00000228895 |
| Triticum turgidum | chr7A | 1 | CH_ttu_745 | 3 | 3 | 0.000944981 |
| Triticum turgidum | chr7A | 1 | CH_ttu_746 | 3 | 3 | 0.000944981 |
| Triticum turgidum | chr3A | 1 | CH_ttu_747 | 3 | 3 | 0.000944981 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00093.1 | 1 | CH_zjn_158 | 4 | 12 | 0.000150777 |
| Zea mays B73 | 9 | 1 | CH_zma_144 | 4 | 8 | 0.0000487865 |
| Asparagus officinalis | AsparagusV1_03 | 2 | CH_aof_103 | 3 | 4 | 0.0000890815 |
| Allium sativum | chr2 | 2 | CH_asa_670 | 4 | 11 | 0.000316896 |
| Allium sativum | chr1 | 2 | CH_asa_757 | 6 | 70 | 0.000467533 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_154 | 4 | 5 | 0.000000350454 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_287 | 6 | 72 | 0.000106644 |
| Amborella trichopoda | AmTr_v1.0_scaffold00159 | 2 | CH_atr_149 | 3 | 3 | 0.0000566483 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_72 | 3 | 3 | 0.0000559925 |
| Dioscorea dumetorum | contig3 | 2 | CH_ddu_245 | 3 | 3 | 0.000298325 |
| Eragrostis curvula | Contig25 | 2 | CH_ecu_520 | 3 | 3 | 0.0000498355 |
| Elaeis guineensis | EG5.1_Chr13 | 2 | CH_egu_182 | 3 | 3 | 0.000166136 |
| Glycine max | Gm20 | 2 | CH_gma_149 | 5 | 6 | 0.0000000464293 |
| Glycine max | Gm10 | 2 | CH_gma_60 | 7 | 10 | 0.00000000000647873 |
| Glycine max | Gm18 | 2 | CH_gma_81 | 6 | 7 | 0.000000000143922 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_375 | 3 | 3 | 0.00030014 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_76 | 7 | 19 | 0.000000000140958 |
| Lolium perenne | Lp_chr1_0 | 2 | CH_lpe_192 | 4 | 9 | 0.0000136015 |
| Magnolia biondii | Chr10 | 2 | CH_mbi_152 | 6 | 33 | 0.0000000706207 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_382 | 4 | 16 | 0.000110421 |
| Miscanthus sinensis | Chr13 | 2 | CH_msi_273 | 4 | 6 | 0.0000114942 |
| Miscanthus sinensis | Chr03 | 2 | CH_msi_525 | 3 | 3 | 0.000415101 |
| Miscanthus sinensis | Chr09 | 2 | CH_msi_67 | 6 | 8 | 0.0000000000716358 |
| Oryza sativa Kitaake | Chr1 | 2 | CH_osak_392 | 3 | 3 | 0.00030806 |
| Oryza sativa Kitaake | Chr4 | 2 | CH_osak_393 | 3 | 3 | 0.00030806 |
| Phyllostachys edulis | hic_scaffold_22 | 2 | CH_ped_119 | 5 | 7 | 0.0000000505421 |
| Phyllostachys edulis | hic_scaffold_7 | 2 | CH_ped_138 | 5 | 8 | 0.000000134538 |
| Populus trichocarpa | Chr03 | 2 | CH_ptr_134 | 5 | 5 | 0.00000000485103 |
| Populus trichocarpa | Chr07 | 2 | CH_ptr_518 | 3 | 3 | 0.000693657 |
| Sorghum bicolor | Chr02 | 2 | CH_sbi_216 | 4 | 5 | 0.0000040923 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_24 | 8 | 9 | 1.42539e-16 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_179 | 6 | 16 | 0.000000023109 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_352 | 4 | 5 | 0.00000377775 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_766 | 3 | 3 | 0.000377747 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_100 | 9 | 13 | 2.03699e-19 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_1408 | 3 | 5 | 0.000932103 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_149 | 8 | 14 | 7.45609e-16 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_328 | 6 | 13 | 0.000000000304918 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_991 | 3 | 3 | 0.0000933922 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_992 | 3 | 3 | 0.0000933922 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_225 | 4 | 4 | 0.00000337497 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_226 | 4 | 4 | 0.00000337497 |
| Solanum lycopersicum | SL4.0ch04 | 2 | CH_sly_260 | 5 | 14 | 0.000020345 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_373 | 4 | 7 | 0.000117242 |
| Spirodela polyrhiza | pseudo1 | 2 | CH_spo_169 | 4 | 12 | 0.000231083 |
| Spirodela polyrhiza | pseudo20 | 2 | CH_spo_44 | 5 | 6 | 0.00000000592418 |
| Spirodela polyrhiza | pseudo4 | 2 | CH_spo_87 | 4 | 5 | 0.00000236251 |
| Saccharum spontaneum | Chr2B | 2 | CH_ssp_1048 | 3 | 3 | 0.000424927 |
| Saccharum spontaneum | Chr2C | 2 | CH_ssp_512 | 4 | 6 | 0.0000107683 |
| Triticum aestivum | Chr7D | 2 | CH_tae_1008 | 4 | 6 | 0.0000735331 |
| Triticum aestivum | Chr3A | 2 | CH_tae_1118 | 4 | 7 | 0.000171221 |
| Triticum aestivum | Chr6B | 2 | CH_tae_1350 | 4 | 9 | 0.000613842 |
| Triticum aestivum | Chr3B | 2 | CH_tae_159 | 7 | 7 | 0.0000000000000837785 |
| Triticum aestivum | Chr7D | 2 | CH_tae_666 | 6 | 19 | 0.00000086181 |
| Triticum aestivum | Chr7B | 2 | CH_tae_683 | 7 | 39 | 0.00000119925 |
| Triticum aestivum | Chr6D | 2 | CH_tae_801 | 5 | 11 | 0.00000579574 |
| Triticum aestivum | Chr7B | 2 | CH_tae_933 | 4 | 5 | 0.000024562 |
| Triticum dicoccoides | 3A | 2 | CH_tdi_283 | 5 | 17 | 0.00000454627 |
| Triticum turgidum | chr1B | 2 | CH_ttu_332 | 4 | 4 | 0.00000228895 |
| Triticum turgidum | chr7B | 2 | CH_ttu_333 | 4 | 4 | 0.00000228895 |
| Triticum turgidum | chr7A | 2 | CH_ttu_745 | 3 | 3 | 0.000944981 |
| Triticum turgidum | chr7A | 2 | CH_ttu_746 | 3 | 3 | 0.000944981 |
| Triticum turgidum | chr3A | 2 | CH_ttu_747 | 3 | 3 | 0.000944981 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00093.1 | 2 | CH_zjn_158 | 4 | 12 | 0.000150777 |
| Zea mays B73 | 9 | 2 | CH_zma_144 | 4 | 8 | 0.0000487865 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |