Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr4 | 1 | CH_asa_122 | 6 | 8 | 0.00000000398914 |
| Allium sativum | chr2 | 1 | CH_asa_123 | 6 | 8 | 0.00000000398914 |
| Allium sativum | chr7_2 | 1 | CH_asa_26 | 11 | 20 | 1.50032e-17 |
| Aegilops tauschii | 5D | 1 | CH_ata_189 | 4 | 5 | 0.0000391946 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_271 | 6 | 7 | 0.0000000585455 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_307 | 7 | 14 | 0.000000195348 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_580 | 5 | 8 | 0.000065386 |
| Cenchrus purpureus | GWHAORA00000014 | 1 | CH_cpu_866 | 4 | 5 | 0.000832838 |
| Digitaria exilis | Dexi_CM05836_chr07A | 1 | CH_dex_399 | 4 | 4 | 0.0000530252 |
| Digitaria exilis | Dexi_CM05836_chr07B | 1 | CH_dex_400 | 4 | 4 | 0.0000530252 |
| Eragrostis curvula | Contig50 | 1 | CH_ecu_432 | 6 | 21 | 0.000010637 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_437 | 4 | 4 | 0.0000132483 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_371 | 4 | 7 | 0.000262766 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_167 | 4 | 4 | 0.00000201848 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_239 | 7 | 40 | 0.0000036583 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_252 | 4 | 4 | 0.00000574001 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_378 | 7 | 62 | 0.0000905063 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_546 | 4 | 8 | 0.00039744 |
| Marchantia polymorpha | scaffold_31 | 1 | CH_mpo_51 | 4 | 5 | 0.00000464468 |
| Oryza sativa Kitaake | Chr12 | 1 | CH_osak_329 | 4 | 5 | 0.000117823 |
| Panicum hallii | Chr07 | 1 | CH_pha_377 | 4 | 6 | 0.000450833 |
| Populus trichocarpa | Chr18 | 1 | CH_ptr_295 | 4 | 4 | 0.0000520595 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_407 | 4 | 5 | 0.000259008 |
| Sorghum bicolor | Chr07 | 1 | CH_sbi_144 | 5 | 5 | 0.000000169322 |
| Sorghum bicolor | Chr08 | 1 | CH_sbi_89 | 6 | 6 | 0.000000000914021 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_241 | 7 | 7 | 0.00000000000143529 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_275 | 7 | 8 | 0.0000000000114382 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_298 | 7 | 9 | 0.0000000000512742 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_624 | 9 | 74 | 0.00000232636 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_666 | 5 | 9 | 0.00000921634 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_70 | 12 | 13 | 2.7705e-23 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_989 | 4 | 5 | 0.0000834264 |
| Setaria italica | scaffold_7 | 1 | CH_sit_374 | 4 | 5 | 0.000196604 |
| Setaria italica | scaffold_6 | 1 | CH_sit_42 | 8 | 8 | 0.0000000000000417999 |
| Setaria italica | scaffold_3 | 1 | CH_sit_448 | 4 | 6 | 0.000587083 |
| Spirodela polyrhiza | pseudo6 | 1 | CH_spo_84 | 5 | 7 | 0.00000170796 |
| Saccharum spontaneum | Chr6D | 1 | CH_ssp_729 | 4 | 4 | 0.000100699 |
| Saccharum spontaneum | Chr6C | 1 | CH_ssp_730 | 4 | 4 | 0.000100699 |
| Setaria viridis | Chr_06 | 1 | CH_svi_42 | 8 | 9 | 0.000000000000170629 |
| Setaria viridis | Chr_03 | 1 | CH_svi_422 | 4 | 6 | 0.000418458 |
| Setaria viridis | Chr_07 | 1 | CH_svi_423 | 4 | 6 | 0.000418458 |
| Triticum aestivum | Chr6D | 1 | CH_tae_1022 | 4 | 4 | 0.0000836827 |
| Triticum aestivum | Chr5B | 1 | CH_tae_1023 | 4 | 4 | 0.0000836827 |
| Triticum aestivum | Chr5D | 1 | CH_tae_1024 | 4 | 4 | 0.0000836827 |
| Triticum aestivum | Chr5A | 1 | CH_tae_621 | 5 | 5 | 0.000000440678 |
| Triticum aestivum | Chr4D | 1 | CH_tae_622 | 5 | 5 | 0.000000440678 |
| Triticum aestivum | Chr3D | 1 | CH_tae_734 | 5 | 6 | 0.00000263246 |
| Triticum aestivum | Chr3B | 1 | CH_tae_99 | 10 | 12 | 1.1361e-16 |
| Triticum turgidum | chr3A | 1 | CH_ttu_302 | 5 | 5 | 0.00000131187 |
| Triticum turgidum | chr3B | 1 | CH_ttu_65 | 8 | 9 | 0.000000000000250696 |
| Zea mays B73 | 4 | 1 | CH_zma_209 | 4 | 5 | 0.00023884 |
| Allium sativum | chr4 | 2 | CH_asa_122 | 6 | 8 | 0.00000000398914 |
| Allium sativum | chr2 | 2 | CH_asa_123 | 6 | 8 | 0.00000000398914 |
| Allium sativum | chr7_2 | 2 | CH_asa_26 | 11 | 20 | 1.50032e-17 |
| Aegilops tauschii | 5D | 2 | CH_ata_189 | 4 | 5 | 0.0000391946 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_271 | 6 | 7 | 0.0000000585455 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_307 | 7 | 14 | 0.000000195348 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_580 | 5 | 8 | 0.000065386 |
| Cenchrus purpureus | GWHAORA00000014 | 2 | CH_cpu_866 | 4 | 5 | 0.000832838 |
| Digitaria exilis | Dexi_CM05836_chr07A | 2 | CH_dex_399 | 4 | 4 | 0.0000530252 |
| Digitaria exilis | Dexi_CM05836_chr07B | 2 | CH_dex_400 | 4 | 4 | 0.0000530252 |
| Eragrostis curvula | Contig50 | 2 | CH_ecu_432 | 6 | 21 | 0.000010637 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_437 | 4 | 4 | 0.0000132483 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_371 | 4 | 7 | 0.000262766 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_167 | 4 | 4 | 0.00000201848 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_239 | 7 | 40 | 0.0000036583 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_252 | 4 | 4 | 0.00000574001 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_378 | 7 | 62 | 0.0000905063 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_546 | 4 | 8 | 0.00039744 |
| Marchantia polymorpha | scaffold_31 | 2 | CH_mpo_51 | 4 | 5 | 0.00000464468 |
| Oryza sativa Kitaake | Chr12 | 2 | CH_osak_329 | 4 | 5 | 0.000117823 |
| Panicum hallii | Chr07 | 2 | CH_pha_377 | 4 | 6 | 0.000450833 |
| Populus trichocarpa | Chr18 | 2 | CH_ptr_295 | 4 | 4 | 0.0000520595 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_407 | 4 | 5 | 0.000259008 |
| Sorghum bicolor | Chr07 | 2 | CH_sbi_144 | 5 | 5 | 0.000000169322 |
| Sorghum bicolor | Chr08 | 2 | CH_sbi_89 | 6 | 6 | 0.000000000914021 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_241 | 7 | 7 | 0.00000000000143529 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_275 | 7 | 8 | 0.0000000000114382 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_298 | 7 | 9 | 0.0000000000512742 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_624 | 9 | 74 | 0.00000232636 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_666 | 5 | 9 | 0.00000921634 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_70 | 12 | 13 | 2.7705e-23 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_989 | 4 | 5 | 0.0000834264 |
| Setaria italica | scaffold_7 | 2 | CH_sit_374 | 4 | 5 | 0.000196604 |
| Setaria italica | scaffold_6 | 2 | CH_sit_42 | 8 | 8 | 0.0000000000000417999 |
| Setaria italica | scaffold_3 | 2 | CH_sit_448 | 4 | 6 | 0.000587083 |
| Spirodela polyrhiza | pseudo6 | 2 | CH_spo_84 | 5 | 7 | 0.00000170796 |
| Saccharum spontaneum | Chr6D | 2 | CH_ssp_729 | 4 | 4 | 0.000100699 |
| Saccharum spontaneum | Chr6C | 2 | CH_ssp_730 | 4 | 4 | 0.000100699 |
| Setaria viridis | Chr_06 | 2 | CH_svi_42 | 8 | 9 | 0.000000000000170629 |
| Setaria viridis | Chr_03 | 2 | CH_svi_422 | 4 | 6 | 0.000418458 |
| Setaria viridis | Chr_07 | 2 | CH_svi_423 | 4 | 6 | 0.000418458 |
| Triticum aestivum | Chr6D | 2 | CH_tae_1022 | 4 | 4 | 0.0000836827 |
| Triticum aestivum | Chr5B | 2 | CH_tae_1023 | 4 | 4 | 0.0000836827 |
| Triticum aestivum | Chr5D | 2 | CH_tae_1024 | 4 | 4 | 0.0000836827 |
| Triticum aestivum | Chr5A | 2 | CH_tae_621 | 5 | 5 | 0.000000440678 |
| Triticum aestivum | Chr4D | 2 | CH_tae_622 | 5 | 5 | 0.000000440678 |
| Triticum aestivum | Chr3D | 2 | CH_tae_734 | 5 | 6 | 0.00000263246 |
| Triticum aestivum | Chr3B | 2 | CH_tae_99 | 10 | 12 | 1.1361e-16 |
| Triticum turgidum | chr3A | 2 | CH_ttu_302 | 5 | 5 | 0.00000131187 |
| Triticum turgidum | chr3B | 2 | CH_ttu_65 | 8 | 9 | 0.000000000000250696 |
| Zea mays B73 | 4 | 2 | CH_zma_209 | 4 | 5 | 0.00023884 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |