| 15.3.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import |
4 |
| 15.3.1.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.assembly factor (RPAP3) |
6 |
| 15.3.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.nuclear import factor (RIMA) |
2 |
| 15.3.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation |
2 |
| 15.3.2.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.CTDK-I protein kinase complex.T-class cyclin regulatory component |
6 |
| 15.3.2.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-I phosphatase |
8 |
| 15.3.2.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-II phosphatase |
8 |
| 15.3.3.1.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIa basal transcription factor heterodimer.large subunit |
20 |
| 15.3.3.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIa basal transcription factor heterodimer.small subunit |
8 |
| 15.3.3.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb) |
2 |
| 15.3.3.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer |
4 |
| 15.3.3.3.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer.subunit alpha |
14 |
| 15.3.3.3.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer.subunit beta |
6 |
| 15.3.3.4.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit alpha |
6 |
| 15.3.3.4.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta |
16 |
| 15.3.3.5.1.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL2/XPB |
4 |
| 15.3.3.5.1.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB1 |
8 |
| 15.3.3.5.1.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB2 |
8 |
| 15.3.3.5.1.6 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB4 |
2 |
| 15.3.3.5.1.7 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB5 |
10 |
| 15.3.3.5.2.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.CAK kinase module.cyclin-dependent kinase component |
4 |
| 15.3.3.5.2.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.CAK kinase module.scaffolding component TFB3 |
2 |
| 15.3.3.6.1.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.NC2 regulator heterodimer.component alpha |
4 |
| 15.3.3.6.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.NC2 regulator heterodimer.component beta |
4 |
| 15.3.3.7 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex |
2 |
| 15.3.3.7.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC1 |
2 |
| 15.3.3.7.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC4 |
4 |
| 15.3.4.1.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF5 |
10 |
| 15.3.4.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF6 |
4 |
| 15.3.4.1.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF9 |
16 |
| 15.3.4.2.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.TATA-box-binding component |
12 |
| 15.3.4.2.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component HAF/TAF1 |
2 |
| 15.3.4.2.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF2 |
6 |
| 15.3.4.2.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF4 |
10 |
| 15.3.4.2.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF7 |
4 |
| 15.3.4.2.6 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF8 |
2 |
| 15.3.4.2.7 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF11 |
2 |
| 15.3.4.3.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA2 |
2 |
| 15.3.4.3.1.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA3 |
4 |
| 15.3.4.3.1.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component SGF29 |
6 |
| 15.3.4.3.2.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.DUB histone deubiquitinating module.component SGF11 |
2 |
| 15.3.4.3.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module |
2 |
| 15.3.4.3.3.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component ADA1 |
10 |
| 15.3.4.3.3.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component SPT20/ADA5 |
8 |
| 15.3.4.3.3.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component HAF/TAF1 |
26 |
| 15.3.4.3.3.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component SPT3/TAF13 |
2 |
| 15.3.4.3.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.component CHR5 |
2 |
| 15.3.4.4.1.10 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED30 |
2 |
| 15.3.4.4.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED8 |
6 |
| 15.3.4.4.1.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED11 |
6 |
| 15.3.4.4.1.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED17 |
4 |
| 15.3.4.4.1.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED18 |
4 |
| 15.3.4.4.1.6 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED19 |
6 |
| 15.3.4.4.1.7 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED20 |
6 |
| 15.3.4.4.1.8 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED22 |
2 |
| 15.3.4.4.1.9 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED28 |
2 |
| 15.3.4.4.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module |
2 |
| 15.3.4.4.2.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED4 |
4 |
| 15.3.4.4.2.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED7 |
6 |
| 15.3.4.4.2.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED21 |
4 |
| 15.3.4.4.2.6 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED31 |
2 |
| 15.3.4.4.3.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED2/MED29/MED32 |
6 |
| 15.3.4.4.3.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED3/MED27 |
4 |
| 15.3.4.4.3.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED5/MED24/MED33 |
14 |
| 15.3.4.4.3.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED14 |
8 |
| 15.3.4.4.3.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED15 |
32 |
| 15.3.4.4.3.6 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED16 |
4 |
| 15.3.4.4.3.7 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED23 |
4 |
| 15.3.4.4.4.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED12 |
8 |
| 15.3.4.4.4.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED13 |
8 |
| 15.3.4.4.4.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component CycC |
2 |
| 15.3.4.4.5.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED25 |
12 |
| 15.3.4.4.5.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED26 |
4 |
| 15.3.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation |
2 |
| 15.3.5.1.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP4/LEO1 |
2 |
| 15.3.5.1.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP5/RTF1 |
4 |
| 15.3.5.1.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP6/CTR9 |
8 |
| 15.3.5.2.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP1 |
2 |
| 15.3.5.2.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP2 |
2 |
| 15.3.5.2.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP3 |
8 |
| 15.3.5.2.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP4 |
12 |
| 15.3.5.2.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP5 |
6 |
| 15.3.5.2.7 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.associated regulatory component DRL1 |
2 |
| 15.3.5.3.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5 |
4 |
| 15.3.5.4.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6 |
6 |
| 15.3.5.4.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component IWS1 |
10 |
| 15.3.5.5 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.regulatory protein (MINIYO) |
4 |
| 15.3.6.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) |
2 |
| 15.3.6.2.1 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.R-loop reader protein (ALBA1/2) |
8 |
| 15.3.6.2.2 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.ribonuclease (RNH1) |
6 |
| 15.3.6.2.3 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b) |
2 |
| 15.3.6.2.4 |
RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.plastidial DNA:RNA hybrid helicase (RHON1) |
4 |