Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr1 | 1 | CH_asa_38 | 7 | 10 | 5.9595e-16 |
| Aegilops tauschii | 6D | 1 | CH_ata_169 | 3 | 3 | 0.0000132903 |
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_170 | 3 | 3 | 0.0000373359 |
| Brachypodium distachyon | Bd5 | 1 | CH_bdi_88 | 4 | 5 | 0.000000184058 |
| Ceratophyllum demersum | 1 | 1 | CH_cde_131 | 3 | 3 | 0.000115475 |
| Dioscorea dumetorum | contig691 | 1 | CH_ddu_83 | 4 | 4 | 0.000000110751 |
| Dioscorea dumetorum | contig702 | 1 | CH_ddu_84 | 4 | 4 | 0.000000110751 |
| Digitaria exilis | Dexi_CM05836_chr01A | 1 | CH_dex_328 | 3 | 3 | 0.0000100256 |
| Digitaria exilis | Dexi_CM05836_chr01A | 1 | CH_dex_386 | 3 | 4 | 0.000040086 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_225 | 3 | 3 | 0.0000100306 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_309 | 3 | 3 | 0.0000468584 |
| Magnolia biondii | Chr12 | 1 | CH_mbi_482 | 3 | 4 | 0.000187289 |
| Miscanthus sinensis | Chr11 | 1 | CH_msi_333 | 3 | 3 | 0.0000617576 |
| Oryza brachyantha | 4 | 1 | CH_obr_113 | 3 | 4 | 0.00000179808 |
| Oryza sativa ssp. japonica | chr04 | 1 | CH_osa_178 | 3 | 3 | 0.0000169863 |
| Panicum hallii | Chr01 | 1 | CH_pha_222 | 3 | 3 | 0.0000393585 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_400 | 3 | 3 | 0.000189532 |
| Sorghum bicolor | Chr04 | 1 | CH_sbi_246 | 3 | 3 | 0.0000337924 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_441 | 3 | 3 | 0.0000356961 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_148 | 7 | 12 | 7.38868e-16 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_669 | 3 | 3 | 0.0000104125 |
| Setaria italica | scaffold_7 | 1 | CH_sit_265 | 3 | 3 | 0.0000392672 |
| Setaria italica | scaffold_1 | 1 | CH_sit_266 | 3 | 3 | 0.0000392672 |
| Setaria viridis | Chr_01 | 1 | CH_svi_321 | 3 | 4 | 0.000126843 |
| Triticum aestivum | Chr6A | 1 | CH_tae_1006 | 3 | 3 | 0.0000703612 |
| Triticum aestivum | Chr6B | 1 | CH_tae_1234 | 3 | 4 | 0.000281263 |
| Triticum dicoccoides | 6A | 1 | CH_tdi_424 | 3 | 4 | 0.000116784 |
| Triticum turgidum | chr2A | 1 | CH_ttu_440 | 3 | 3 | 0.000023758 |
| Triticum turgidum | chr6B | 1 | CH_ttu_441 | 3 | 3 | 0.000023758 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00056.1 | 1 | CH_zjn_122 | 3 | 4 | 0.000075011 |
| Allium sativum | chr1 | 2 | CH_asa_38 | 7 | 10 | 5.9595e-16 |
| Aegilops tauschii | 6D | 2 | CH_ata_169 | 3 | 3 | 0.0000132903 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_170 | 3 | 3 | 0.0000373359 |
| Brachypodium distachyon | Bd5 | 2 | CH_bdi_88 | 4 | 5 | 0.000000184058 |
| Ceratophyllum demersum | 1 | 2 | CH_cde_131 | 3 | 3 | 0.000115475 |
| Dioscorea dumetorum | contig691 | 2 | CH_ddu_83 | 4 | 4 | 0.000000110751 |
| Dioscorea dumetorum | contig702 | 2 | CH_ddu_84 | 4 | 4 | 0.000000110751 |
| Digitaria exilis | Dexi_CM05836_chr01A | 2 | CH_dex_328 | 3 | 3 | 0.0000100256 |
| Digitaria exilis | Dexi_CM05836_chr01A | 2 | CH_dex_386 | 3 | 4 | 0.000040086 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_225 | 3 | 3 | 0.0000100306 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_309 | 3 | 3 | 0.0000468584 |
| Magnolia biondii | Chr12 | 2 | CH_mbi_482 | 3 | 4 | 0.000187289 |
| Miscanthus sinensis | Chr11 | 2 | CH_msi_333 | 3 | 3 | 0.0000617576 |
| Oryza brachyantha | 4 | 2 | CH_obr_113 | 3 | 4 | 0.00000179808 |
| Oryza sativa ssp. japonica | chr04 | 2 | CH_osa_178 | 3 | 3 | 0.0000169863 |
| Panicum hallii | Chr01 | 2 | CH_pha_222 | 3 | 3 | 0.0000393585 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_400 | 3 | 3 | 0.000189532 |
| Sorghum bicolor | Chr04 | 2 | CH_sbi_246 | 3 | 3 | 0.0000337924 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_441 | 3 | 3 | 0.0000356961 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_148 | 7 | 12 | 7.38868e-16 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_669 | 3 | 3 | 0.0000104125 |
| Setaria italica | scaffold_7 | 2 | CH_sit_265 | 3 | 3 | 0.0000392672 |
| Setaria italica | scaffold_1 | 2 | CH_sit_266 | 3 | 3 | 0.0000392672 |
| Setaria viridis | Chr_01 | 2 | CH_svi_321 | 3 | 4 | 0.000126843 |
| Triticum aestivum | Chr6A | 2 | CH_tae_1006 | 3 | 3 | 0.0000703612 |
| Triticum aestivum | Chr6B | 2 | CH_tae_1234 | 3 | 4 | 0.000281263 |
| Triticum dicoccoides | 6A | 2 | CH_tdi_424 | 3 | 4 | 0.000116784 |
| Triticum turgidum | chr2A | 2 | CH_ttu_440 | 3 | 3 | 0.000023758 |
| Triticum turgidum | chr6B | 2 | CH_ttu_441 | 3 | 3 | 0.000023758 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00056.1 | 2 | CH_zjn_122 | 3 | 4 | 0.000075011 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |