Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr3 | 1 | CH_asa_875 | 2 | 2 | 0.000813827 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_504 | 3 | 4 | 0.0000167672 |
| Lolium perenne | Lp_chr7_0.1 | 1 | CH_lpe_154 | 3 | 4 | 0.00000102271 |
| Miscanthus sinensis | Chr06 | 1 | CH_msi_108 | 4 | 5 | 0.00000000531967 |
| Phyllostachys edulis | hic_scaffold_14 | 1 | CH_ped_205 | 3 | 3 | 0.00000383516 |
| Setaria italica | scaffold_4 | 1 | CH_sit_198 | 3 | 3 | 0.00000144536 |
| Solanum lycopersicum | SL4.0ch07 | 1 | CH_sly_108 | 5 | 10 | 0.000000000951199 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_119 | 5 | 12 | 0.00000000298653 |
| Setaria viridis | Chr_04 | 1 | CH_svi_186 | 3 | 3 | 0.00000116802 |
| Triticum aestivum | Chr7A | 1 | CH_tae_193 | 5 | 5 | 0.000000000000688303 |
| Triticum dicoccoides | 7B | 1 | CH_tdi_261 | 3 | 3 | 0.00000267537 |
| Triticum dicoccoides | 7A | 1 | CH_tdi_34 | 6 | 7 | 4.88607e-16 |
| Triticum turgidum | chr7A | 1 | CH_ttu_139 | 4 | 4 | 0.00000000115858 |
| Allium sativum | chr3 | 2 | CH_asa_875 | 2 | 2 | 0.000813827 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_504 | 3 | 4 | 0.0000167672 |
| Lolium perenne | Lp_chr7_0.1 | 2 | CH_lpe_154 | 3 | 4 | 0.00000102271 |
| Miscanthus sinensis | Chr06 | 2 | CH_msi_108 | 4 | 5 | 0.00000000531967 |
| Phyllostachys edulis | hic_scaffold_14 | 2 | CH_ped_205 | 3 | 3 | 0.00000383516 |
| Setaria italica | scaffold_4 | 2 | CH_sit_198 | 3 | 3 | 0.00000144536 |
| Solanum lycopersicum | SL4.0ch07 | 2 | CH_sly_108 | 5 | 10 | 0.000000000951199 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_119 | 5 | 12 | 0.00000000298653 |
| Setaria viridis | Chr_04 | 2 | CH_svi_186 | 3 | 3 | 0.00000116802 |
| Triticum aestivum | Chr7A | 2 | CH_tae_193 | 5 | 5 | 0.000000000000688303 |
| Triticum dicoccoides | 7B | 2 | CH_tdi_261 | 3 | 3 | 0.00000267537 |
| Triticum dicoccoides | 7A | 2 | CH_tdi_34 | 6 | 7 | 4.88607e-16 |
| Triticum turgidum | chr7A | 2 | CH_ttu_139 | 4 | 4 | 0.00000000115858 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |