Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyon Bd1 1 CH_bdi_136 3 3 0.00000552766
Cenchrus purpureus GWHAORA00000002 1 CH_cpu_505 3 3 0.000017691
Cenchrus purpureus GWHAORA00000008 1 CH_cpu_753 3 6 0.000353312
Glycine max Gm09 1 CH_gma_143 4 4 0.0000000292608
Glycine max Gm08 1 CH_gma_315 3 3 0.0000350405
Solanum lycopersicum SL4.0ch02 1 CH_sly_243 3 3 0.00000915189
Solanum lycopersicum SL4.0ch01 1 CH_sly_45 6 6 0.00000000000000158261
Vanilla planifolia CM028151.1 1 CH_vpl_340 3 8 0.000521488
Vanilla planifolia CM028150.1 1 CH_vpl_65 5 33 0.000000811318
Brachypodium distachyon Bd1 2 CH_bdi_136 3 3 0.00000552766
Cenchrus purpureus GWHAORA00000002 2 CH_cpu_505 3 3 0.000017691
Cenchrus purpureus GWHAORA00000008 2 CH_cpu_753 3 6 0.000353312
Glycine max Gm09 2 CH_gma_143 4 4 0.0000000292608
Glycine max Gm08 2 CH_gma_315 3 3 0.0000350405
Solanum lycopersicum SL4.0ch02 2 CH_sly_243 3 3 0.00000915189
Solanum lycopersicum SL4.0ch01 2 CH_sly_45 6 6 0.00000000000000158261
Vanilla planifolia CM028151.1 2 CH_vpl_340 3 8 0.000521488
Vanilla planifolia CM028150.1 2 CH_vpl_65 5 33 0.000000811318

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001