Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.organelle machinery

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Eragrostis curvula Contig50 1 CH_ecu_256 6 19 0.0000000705447
Miscanthus sinensis Chr01 1 CH_msi_226 7 60 0.00000233635
Oryza sativa ssp. indica Chr11 1 CH_osaindica_112 4 4 0.000000215869
Sorghum bicolor Chr01 1 CH_sbi_240 6 50 0.0000253702
Eragrostis curvula Contig50 2 CH_ecu_256 6 19 0.0000000705447
Miscanthus sinensis Chr01 2 CH_msi_226 7 60 0.00000233635
Oryza sativa ssp. indica Chr11 2 CH_osaindica_112 4 4 0.000000215869
Sorghum bicolor Chr01 2 CH_sbi_240 6 50 0.0000253702

Available child term results

Ontology identifier Description Number of clusters
15.6.1.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) 16
15.6.1.2.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components 20
15.6.1.2.2.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP1/TAC3 4
15.6.1.2.2.10 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP10/TrxZ 2
15.6.1.2.2.11 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP11/MURE 2
15.6.1.2.2.12 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component FLN2 2
15.6.1.2.2.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP3/TAC10 2
15.6.1.2.2.4 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP4/FSD3 2
15.6.1.2.2.5 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP5/TAC12 6
15.6.1.2.2.7 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP7/TAC14 8
15.6.1.2.2.8 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP8/TAC6 8
15.6.1.2.2.9 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP9/FSD2 4
15.6.1.2.3.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC5 2
15.6.1.2.3.10 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.FSD2-interacting component PRDA1 6
15.6.1.2.3.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC9 2
15.6.1.2.3.4 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC13 4
15.6.1.2.3.7 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC17 2
15.6.1.2.3.8 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC18 2
15.6.1.2.3.9 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component PRIN2 4
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) 8
15.6.2.2 RNA biosynthesis.organelle machinery.transcriptional regulation.transcription factor (mTERF) 272

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001