Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (TIFY)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr3 | 1 | CH_asa_317 | 3 | 5 | 0.0000102463 |
| Allium sativum | chr1 | 1 | CH_asa_351 | 3 | 7 | 0.0000358483 |
| Aegilops tauschii | 4D | 1 | CH_ata_123 | 3 | 3 | 0.00000104024 |
| Aegilops tauschii | 7D | 1 | CH_ata_76 | 4 | 7 | 0.00000000895907 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_127 | 3 | 3 | 0.00000207644 |
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_164 | 3 | 5 | 0.0000207525 |
| Cenchrus purpureus | GWHAORA00000006 | 1 | CH_cpu_496 | 3 | 4 | 0.0000131848 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_761 | 3 | 10 | 0.000394902 |
| Digitaria exilis | Dexi_CM05836_chr09B | 1 | CH_dex_536 | 3 | 10 | 0.000228826 |
| Digitaria exilis | Dexi_CM05836_chr09A | 1 | CH_dex_537 | 3 | 10 | 0.000228826 |
| Eragrostis curvula | 1 | 1 | CH_ecu_64 | 6 | 9 | 8.28604e-16 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_70 | 4 | 4 | 0.0000000000992669 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_439 | 2 | 2 | 0.000899989 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_254 | 3 | 5 | 0.00000583585 |
| Miscanthus sinensis | Chr01 | 1 | CH_msi_235 | 3 | 3 | 0.00000314767 |
| Miscanthus sinensis | Chr02 | 1 | CH_msi_566 | 3 | 11 | 0.000518247 |
| Miscanthus sinensis | Chr02 | 1 | CH_msi_80 | 5 | 12 | 0.000000000270892 |
| Oryza alta | GWHAZTO00000003 | 1 | CH_oal_208 | 3 | 3 | 0.000000694398 |
| Phyllostachys edulis | hic_scaffold_5 | 1 | CH_ped_17 | 8 | 13 | 3.23927e-19 |
| Phyllostachys edulis | hic_scaffold_21 | 1 | CH_ped_231 | 3 | 3 | 0.00000909978 |
| Phyllostachys edulis | hic_scaffold_13 | 1 | CH_ped_360 | 3 | 6 | 0.000181768 |
| Panicum hallii | Chr09 | 1 | CH_pha_112 | 4 | 8 | 0.0000000412105 |
| Panicum hallii | Chr09 | 1 | CH_pha_177 | 3 | 3 | 0.00000184382 |
| Sorghum bicolor | Chr01 | 1 | CH_sbi_194 | 3 | 3 | 0.00000187937 |
| Sorghum bicolor | Chr01 | 1 | CH_sbi_307 | 3 | 8 | 0.000105102 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_173 | 4 | 6 | 0.0000000129894 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_425 | 3 | 5 | 0.0000253587 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_154 | 6 | 7 | 0.00000000000000117236 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_520 | 4 | 8 | 0.0000000939889 |
| Setaria italica | scaffold_9 | 1 | CH_sit_193 | 3 | 3 | 0.00000111181 |
| Setaria italica | scaffold_9 | 1 | CH_sit_412 | 3 | 14 | 0.0004037 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_215 | 3 | 3 | 0.00000188102 |
| Saccharum spontaneum | Chr1D | 1 | CH_ssp_1031 | 3 | 7 | 0.000368277 |
| Saccharum spontaneum | Chr1B | 1 | CH_ssp_1156 | 3 | 8 | 0.000589026 |
| Saccharum spontaneum | Chr1C | 1 | CH_ssp_215 | 4 | 6 | 0.00000007537 |
| Saccharum spontaneum | Chr1B | 1 | CH_ssp_509 | 3 | 3 | 0.0000105378 |
| Saccharum spontaneum | Chr1D | 1 | CH_ssp_510 | 3 | 3 | 0.0000105378 |
| Setaria viridis | Chr_09 | 1 | CH_svi_228 | 3 | 5 | 0.00000898115 |
| Setaria viridis | Chr_09 | 1 | CH_svi_382 | 3 | 13 | 0.000256446 |
| Triticum aestivum | Chr7D | 1 | CH_tae_212 | 5 | 6 | 0.00000000000317204 |
| Triticum aestivum | Chr7A | 1 | CH_tae_433 | 4 | 5 | 0.00000000807445 |
| Triticum aestivum | Chr7B | 1 | CH_tae_526 | 4 | 8 | 0.00000011295 |
| Triticum aestivum | Chr4B | 1 | CH_tae_779 | 3 | 3 | 0.00000479717 |
| Triticum aestivum | Chr4A | 1 | CH_tae_780 | 3 | 3 | 0.00000479717 |
| Triticum aestivum | Chr4D | 1 | CH_tae_781 | 3 | 3 | 0.00000479717 |
| Triticum turgidum | chr4A | 1 | CH_ttu_297 | 3 | 3 | 0.00000119559 |
| Triticum turgidum | chr4B | 1 | CH_ttu_298 | 3 | 3 | 0.00000119559 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00032.1 | 1 | CH_zjn_123 | 3 | 9 | 0.000078379 |
| Zea mays B73 | 1 | 1 | CH_zma_119 | 3 | 3 | 0.00000694535 |
| Zea mays B73 | 1 | 1 | CH_zma_135 | 3 | 4 | 0.00002777 |
| Zea mays B73 | 5 | 1 | CH_zma_167 | 3 | 5 | 0.0000693967 |
| Allium sativum | chr3 | 2 | CH_asa_317 | 3 | 5 | 0.0000102463 |
| Allium sativum | chr1 | 2 | CH_asa_351 | 3 | 7 | 0.0000358483 |
| Aegilops tauschii | 4D | 2 | CH_ata_123 | 3 | 3 | 0.00000104024 |
| Aegilops tauschii | 7D | 2 | CH_ata_76 | 4 | 7 | 0.00000000895907 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_127 | 3 | 3 | 0.00000207644 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_164 | 3 | 5 | 0.0000207525 |
| Cenchrus purpureus | GWHAORA00000006 | 2 | CH_cpu_496 | 3 | 4 | 0.0000131848 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_761 | 3 | 10 | 0.000394902 |
| Digitaria exilis | Dexi_CM05836_chr09B | 2 | CH_dex_536 | 3 | 10 | 0.000228826 |
| Digitaria exilis | Dexi_CM05836_chr09A | 2 | CH_dex_537 | 3 | 10 | 0.000228826 |
| Eragrostis curvula | 1 | 2 | CH_ecu_64 | 6 | 9 | 8.28604e-16 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_70 | 4 | 4 | 0.0000000000992669 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_439 | 2 | 2 | 0.000899989 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_254 | 3 | 5 | 0.00000583585 |
| Miscanthus sinensis | Chr01 | 2 | CH_msi_235 | 3 | 3 | 0.00000314767 |
| Miscanthus sinensis | Chr02 | 2 | CH_msi_566 | 3 | 11 | 0.000518247 |
| Miscanthus sinensis | Chr02 | 2 | CH_msi_80 | 5 | 12 | 0.000000000270892 |
| Oryza alta | GWHAZTO00000003 | 2 | CH_oal_208 | 3 | 3 | 0.000000694398 |
| Phyllostachys edulis | hic_scaffold_5 | 2 | CH_ped_17 | 8 | 13 | 3.23927e-19 |
| Phyllostachys edulis | hic_scaffold_21 | 2 | CH_ped_231 | 3 | 3 | 0.00000909978 |
| Phyllostachys edulis | hic_scaffold_13 | 2 | CH_ped_360 | 3 | 6 | 0.000181768 |
| Panicum hallii | Chr09 | 2 | CH_pha_112 | 4 | 8 | 0.0000000412105 |
| Panicum hallii | Chr09 | 2 | CH_pha_177 | 3 | 3 | 0.00000184382 |
| Sorghum bicolor | Chr01 | 2 | CH_sbi_194 | 3 | 3 | 0.00000187937 |
| Sorghum bicolor | Chr01 | 2 | CH_sbi_307 | 3 | 8 | 0.000105102 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_173 | 4 | 6 | 0.0000000129894 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_425 | 3 | 5 | 0.0000253587 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_154 | 6 | 7 | 0.00000000000000117236 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_520 | 4 | 8 | 0.0000000939889 |
| Setaria italica | scaffold_9 | 2 | CH_sit_193 | 3 | 3 | 0.00000111181 |
| Setaria italica | scaffold_9 | 2 | CH_sit_412 | 3 | 14 | 0.0004037 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_215 | 3 | 3 | 0.00000188102 |
| Saccharum spontaneum | Chr1D | 2 | CH_ssp_1031 | 3 | 7 | 0.000368277 |
| Saccharum spontaneum | Chr1B | 2 | CH_ssp_1156 | 3 | 8 | 0.000589026 |
| Saccharum spontaneum | Chr1C | 2 | CH_ssp_215 | 4 | 6 | 0.00000007537 |
| Saccharum spontaneum | Chr1B | 2 | CH_ssp_509 | 3 | 3 | 0.0000105378 |
| Saccharum spontaneum | Chr1D | 2 | CH_ssp_510 | 3 | 3 | 0.0000105378 |
| Setaria viridis | Chr_09 | 2 | CH_svi_228 | 3 | 5 | 0.00000898115 |
| Setaria viridis | Chr_09 | 2 | CH_svi_382 | 3 | 13 | 0.000256446 |
| Triticum aestivum | Chr7D | 2 | CH_tae_212 | 5 | 6 | 0.00000000000317204 |
| Triticum aestivum | Chr7A | 2 | CH_tae_433 | 4 | 5 | 0.00000000807445 |
| Triticum aestivum | Chr7B | 2 | CH_tae_526 | 4 | 8 | 0.00000011295 |
| Triticum aestivum | Chr4B | 2 | CH_tae_779 | 3 | 3 | 0.00000479717 |
| Triticum aestivum | Chr4A | 2 | CH_tae_780 | 3 | 3 | 0.00000479717 |
| Triticum aestivum | Chr4D | 2 | CH_tae_781 | 3 | 3 | 0.00000479717 |
| Triticum turgidum | chr4A | 2 | CH_ttu_297 | 3 | 3 | 0.00000119559 |
| Triticum turgidum | chr4B | 2 | CH_ttu_298 | 3 | 3 | 0.00000119559 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00032.1 | 2 | CH_zjn_123 | 3 | 9 | 0.000078379 |
| Zea mays B73 | 1 | 2 | CH_zma_119 | 3 | 3 | 0.00000694535 |
| Zea mays B73 | 1 | 2 | CH_zma_135 | 3 | 4 | 0.00002777 |
| Zea mays B73 | 5 | 2 | CH_zma_167 | 3 | 5 | 0.0000693967 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |