Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG02 | 1 | CH_aco_82 | 4 | 6 | 0.000088434 |
| Allium sativum | chr1 | 1 | CH_asa_103 | 7 | 19 | 0.000000000781469 |
| Allium sativum | chr6 | 1 | CH_asa_763 | 5 | 31 | 0.000521746 |
| Allium sativum | chr7_2 | 1 | CH_asa_850 | 4 | 12 | 0.000699771 |
| Allium sativum | chr5 | 1 | CH_asa_851 | 4 | 12 | 0.000699771 |
| Aegilops tauschii | 1D | 1 | CH_ata_338 | 3 | 3 | 0.000742557 |
| Aegilops tauschii | 6D | 1 | CH_ata_50 | 6 | 8 | 0.000000000347583 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 1 | CH_atr_128 | 4 | 5 | 0.0000027577 |
| Cenchrus purpureus | GWHAORA00000002 | 1 | CH_cpu_523 | 4 | 4 | 0.0000266642 |
| Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_318 | 4 | 4 | 0.00000739102 |
| Glycine max | Gm06 | 1 | CH_gma_102 | 7 | 10 | 0.00000000112625 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_292 | 4 | 7 | 0.0000573284 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_438 | 3 | 3 | 0.000693841 |
| Lolium perenne | Lp_chr6_0 | 1 | CH_lpe_105 | 6 | 18 | 0.0000000318871 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_490 | 5 | 27 | 0.00028217 |
| Miscanthus sinensis | Chr01 | 1 | CH_msi_404 | 4 | 6 | 0.000139295 |
| Panicum hallii | Chr02 | 1 | CH_pha_269 | 4 | 6 | 0.000085101 |
| Populus trichocarpa | Chr17 | 1 | CH_ptr_284 | 4 | 4 | 0.0000345449 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_378 | 4 | 4 | 0.00000822579 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_449 | 4 | 5 | 0.0000410082 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_554 | 4 | 6 | 0.000122663 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_95 | 9 | 29 | 0.0000000000465307 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_1172 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_1173 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_1174 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_1175 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_13 | 19 | 23 | 2.32063e-35 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_171 | 9 | 11 | 0.00000000000000958299 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_184 | 8 | 8 | 0.0000000000000328254 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_259 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_260 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_269 | 8 | 11 | 0.00000000000533875 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_280 | 8 | 12 | 0.0000000000159396 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_294 | 8 | 13 | 0.0000000000412445 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_319 | 8 | 15 | 0.000000000204253 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_426 | 8 | 20 | 0.00000000390361 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_428 | 7 | 12 | 0.00000000471563 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_704 | 4 | 4 | 0.0000380352 |
| Setaria italica | scaffold_2 | 1 | CH_sit_259 | 4 | 5 | 0.0000302292 |
| Solanum lycopersicum | SL4.0ch10 | 1 | CH_sly_277 | 4 | 5 | 0.0000332955 |
| Spirodela polyrhiza | pseudo17 | 1 | CH_spo_79 | 6 | 16 | 0.000000671203 |
| Saccharum spontaneum | Chr3B | 1 | CH_ssp_1347 | 4 | 7 | 0.000928976 |
| Saccharum spontaneum | Chr7A | 1 | CH_ssp_582 | 4 | 4 | 0.0000268124 |
| Setaria viridis | Chr_02 | 1 | CH_svi_294 | 4 | 6 | 0.0000596733 |
| Triticum aestivum | Chr2D | 1 | CH_tae_1260 | 4 | 6 | 0.000339712 |
| Triticum aestivum | Chr2A | 1 | CH_tae_1432 | 4 | 7 | 0.000790246 |
| Triticum aestivum | Chr1D | 1 | CH_tae_313 | 6 | 6 | 0.000000000327801 |
| Triticum aestivum | Chr2A | 1 | CH_tae_314 | 6 | 6 | 0.000000000327801 |
| Triticum aestivum | Chr2D | 1 | CH_tae_370 | 6 | 7 | 0.00000000228715 |
| Triticum aestivum | Chr6D | 1 | CH_tae_502 | 6 | 10 | 0.0000000679482 |
| Triticum aestivum | Chr6A | 1 | CH_tae_511 | 5 | 5 | 0.0000000865314 |
| Triticum aestivum | Chr1A | 1 | CH_tae_512 | 5 | 5 | 0.0000000865314 |
| Triticum aestivum | Chr2B | 1 | CH_tae_762 | 6 | 17 | 0.00000391428 |
| Triticum aestivum | Chr2B | 1 | CH_tae_853 | 5 | 9 | 0.0000107655 |
| Triticum aestivum | Chr6B | 1 | CH_tae_922 | 4 | 4 | 0.0000227861 |
| Triticum aestivum | Chr1B | 1 | CH_tae_923 | 4 | 4 | 0.0000227861 |
| Triticum dicoccoides | 6B | 1 | CH_tdi_294 | 4 | 4 | 0.00000617933 |
| Triticum dicoccoides | 1B | 1 | CH_tdi_361 | 4 | 5 | 0.0000308206 |
| Triticum dicoccoides | 6A | 1 | CH_tdi_470 | 4 | 7 | 0.000214684 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_471 | 4 | 7 | 0.000214684 |
| Triticum turgidum | chr1A | 1 | CH_ttu_203 | 5 | 5 | 0.000000039222 |
| Triticum turgidum | chr6A | 1 | CH_ttu_204 | 5 | 5 | 0.000000039222 |
| Triticum turgidum | chr2B | 1 | CH_ttu_638 | 4 | 7 | 0.000380294 |
| Zea mays B73 | 1 | 1 | CH_zma_9 | 9 | 9 | 1.74608e-17 |
| Ananas comosus | LG02 | 2 | CH_aco_82 | 4 | 6 | 0.000088434 |
| Allium sativum | chr1 | 2 | CH_asa_103 | 7 | 19 | 0.000000000781469 |
| Allium sativum | chr6 | 2 | CH_asa_763 | 5 | 31 | 0.000521746 |
| Allium sativum | chr7_2 | 2 | CH_asa_850 | 4 | 12 | 0.000699771 |
| Allium sativum | chr5 | 2 | CH_asa_851 | 4 | 12 | 0.000699771 |
| Aegilops tauschii | 1D | 2 | CH_ata_338 | 3 | 3 | 0.000742557 |
| Aegilops tauschii | 6D | 2 | CH_ata_50 | 6 | 8 | 0.000000000347583 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 2 | CH_atr_128 | 4 | 5 | 0.0000027577 |
| Cenchrus purpureus | GWHAORA00000002 | 2 | CH_cpu_523 | 4 | 4 | 0.0000266642 |
| Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_318 | 4 | 4 | 0.00000739102 |
| Glycine max | Gm06 | 2 | CH_gma_102 | 7 | 10 | 0.00000000112625 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_292 | 4 | 7 | 0.0000573284 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_438 | 3 | 3 | 0.000693841 |
| Lolium perenne | Lp_chr6_0 | 2 | CH_lpe_105 | 6 | 18 | 0.0000000318871 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_490 | 5 | 27 | 0.00028217 |
| Miscanthus sinensis | Chr01 | 2 | CH_msi_404 | 4 | 6 | 0.000139295 |
| Panicum hallii | Chr02 | 2 | CH_pha_269 | 4 | 6 | 0.000085101 |
| Populus trichocarpa | Chr17 | 2 | CH_ptr_284 | 4 | 4 | 0.0000345449 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_378 | 4 | 4 | 0.00000822579 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_449 | 4 | 5 | 0.0000410082 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_554 | 4 | 6 | 0.000122663 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_95 | 9 | 29 | 0.0000000000465307 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_1172 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_1173 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_1174 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_1175 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_13 | 19 | 23 | 2.32063e-35 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_171 | 9 | 11 | 0.00000000000000958299 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_184 | 8 | 8 | 0.0000000000000328254 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_259 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_260 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_269 | 8 | 11 | 0.00000000000533875 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_280 | 8 | 12 | 0.0000000000159396 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_294 | 8 | 13 | 0.0000000000412445 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_319 | 8 | 15 | 0.000000000204253 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_426 | 8 | 20 | 0.00000000390361 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_428 | 7 | 12 | 0.00000000471563 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_704 | 4 | 4 | 0.0000380352 |
| Setaria italica | scaffold_2 | 2 | CH_sit_259 | 4 | 5 | 0.0000302292 |
| Solanum lycopersicum | SL4.0ch10 | 2 | CH_sly_277 | 4 | 5 | 0.0000332955 |
| Spirodela polyrhiza | pseudo17 | 2 | CH_spo_79 | 6 | 16 | 0.000000671203 |
| Saccharum spontaneum | Chr3B | 2 | CH_ssp_1347 | 4 | 7 | 0.000928976 |
| Saccharum spontaneum | Chr7A | 2 | CH_ssp_582 | 4 | 4 | 0.0000268124 |
| Setaria viridis | Chr_02 | 2 | CH_svi_294 | 4 | 6 | 0.0000596733 |
| Triticum aestivum | Chr2D | 2 | CH_tae_1260 | 4 | 6 | 0.000339712 |
| Triticum aestivum | Chr2A | 2 | CH_tae_1432 | 4 | 7 | 0.000790246 |
| Triticum aestivum | Chr1D | 2 | CH_tae_313 | 6 | 6 | 0.000000000327801 |
| Triticum aestivum | Chr2A | 2 | CH_tae_314 | 6 | 6 | 0.000000000327801 |
| Triticum aestivum | Chr2D | 2 | CH_tae_370 | 6 | 7 | 0.00000000228715 |
| Triticum aestivum | Chr6D | 2 | CH_tae_502 | 6 | 10 | 0.0000000679482 |
| Triticum aestivum | Chr6A | 2 | CH_tae_511 | 5 | 5 | 0.0000000865314 |
| Triticum aestivum | Chr1A | 2 | CH_tae_512 | 5 | 5 | 0.0000000865314 |
| Triticum aestivum | Chr2B | 2 | CH_tae_762 | 6 | 17 | 0.00000391428 |
| Triticum aestivum | Chr2B | 2 | CH_tae_853 | 5 | 9 | 0.0000107655 |
| Triticum aestivum | Chr6B | 2 | CH_tae_922 | 4 | 4 | 0.0000227861 |
| Triticum aestivum | Chr1B | 2 | CH_tae_923 | 4 | 4 | 0.0000227861 |
| Triticum dicoccoides | 6B | 2 | CH_tdi_294 | 4 | 4 | 0.00000617933 |
| Triticum dicoccoides | 1B | 2 | CH_tdi_361 | 4 | 5 | 0.0000308206 |
| Triticum dicoccoides | 6A | 2 | CH_tdi_470 | 4 | 7 | 0.000214684 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_471 | 4 | 7 | 0.000214684 |
| Triticum turgidum | chr1A | 2 | CH_ttu_203 | 5 | 5 | 0.000000039222 |
| Triticum turgidum | chr6A | 2 | CH_ttu_204 | 5 | 5 | 0.000000039222 |
| Triticum turgidum | chr2B | 2 | CH_ttu_638 | 4 | 7 | 0.000380294 |
| Zea mays B73 | 1 | 2 | CH_zma_9 | 9 | 9 | 1.74608e-17 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |