Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_244 | 3 | 3 | 0.0000488915 |
| Amborella trichopoda | AmTr_v1.0_scaffold00009 | 1 | CH_atr_225 | 3 | 4 | 0.000170061 |
| Brachypodium distachyon | Bd5 | 1 | CH_bdi_215 | 3 | 3 | 0.0001051 |
| Cenchrus purpureus | GWHAORA00000002 | 1 | CH_cpu_331 | 8 | 80 | 0.000000354348 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_368 | 4 | 4 | 0.00000100678 |
| Cenchrus purpureus | GWHAORA00000002 | 1 | CH_cpu_812 | 4 | 12 | 0.000492118 |
| Digitaria exilis | Dexi_CM05836_chr02A | 1 | CH_dex_294 | 7 | 74 | 0.00000331936 |
| Digitaria exilis | Dexi_CM05836_chr02B | 1 | CH_dex_414 | 6 | 63 | 0.0000792903 |
| Digitaria exilis | Dexi_CM05836_chr05B | 1 | CH_dex_549 | 3 | 3 | 0.000287665 |
| Glycine max | Gm10 | 1 | CH_gma_257 | 4 | 4 | 0.00000577599 |
| Glycine max | Gm03 | 1 | CH_gma_587 | 4 | 9 | 0.000718473 |
| Glycine max | Gm13 | 1 | CH_gma_61 | 7 | 9 | 0.0000000000065842 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_239 | 6 | 63 | 0.0000143946 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_116 | 4 | 5 | 0.0000000887998 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_649 | 4 | 29 | 0.000811418 |
| Phyllostachys edulis | hic_scaffold_10 | 1 | CH_ped_248 | 4 | 6 | 0.0000175137 |
| Phyllostachys edulis | hic_scaffold_18 | 1 | CH_ped_451 | 3 | 3 | 0.00053747 |
| Panicum hallii | Chr09 | 1 | CH_pha_341 | 3 | 3 | 0.00024266 |
| Populus trichocarpa | Chr02 | 1 | CH_ptr_234 | 4 | 4 | 0.0000020928 |
| Populus trichocarpa | Chr14 | 1 | CH_ptr_263 | 4 | 5 | 0.0000104409 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_522 | 3 | 3 | 0.000762218 |
| Populus trichocarpa | Chr03 | 1 | CH_ptr_523 | 3 | 3 | 0.000762218 |
| Populus trichocarpa | Chr05 | 1 | CH_ptr_524 | 3 | 3 | 0.000762218 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_525 | 3 | 3 | 0.000762218 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_241 | 4 | 4 | 0.000000204072 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_1337 | 3 | 5 | 0.000504341 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_191 | 7 | 13 | 0.0000000000000815823 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_671 | 4 | 10 | 0.0000107991 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_973 | 3 | 3 | 0.000050514 |
| Setaria italica | scaffold_9 | 1 | CH_sit_380 | 3 | 3 | 0.000264783 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_198 | 4 | 4 | 0.0000011148 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_497 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_498 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_499 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_500 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_501 | 3 | 3 | 0.000474808 |
| Saccharum spontaneum | Chr2D | 1 | CH_ssp_1032 | 3 | 4 | 0.000374518 |
| Setaria viridis | Chr_09 | 1 | CH_svi_377 | 3 | 3 | 0.000195644 |
| Triticum dicoccoides | 6A | 1 | CH_tdi_478 | 3 | 3 | 0.000255006 |
| Triticum turgidum | chr6A | 1 | CH_ttu_579 | 3 | 3 | 0.000244173 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00004.1 | 1 | CH_zjn_89 | 4 | 8 | 0.0000295553 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_244 | 3 | 3 | 0.0000488915 |
| Amborella trichopoda | AmTr_v1.0_scaffold00009 | 2 | CH_atr_225 | 3 | 4 | 0.000170061 |
| Brachypodium distachyon | Bd5 | 2 | CH_bdi_215 | 3 | 3 | 0.0001051 |
| Cenchrus purpureus | GWHAORA00000002 | 2 | CH_cpu_331 | 8 | 80 | 0.000000354348 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_368 | 4 | 4 | 0.00000100678 |
| Cenchrus purpureus | GWHAORA00000002 | 2 | CH_cpu_812 | 4 | 12 | 0.000492118 |
| Digitaria exilis | Dexi_CM05836_chr02A | 2 | CH_dex_294 | 7 | 74 | 0.00000331936 |
| Digitaria exilis | Dexi_CM05836_chr02B | 2 | CH_dex_414 | 6 | 63 | 0.0000792903 |
| Digitaria exilis | Dexi_CM05836_chr05B | 2 | CH_dex_549 | 3 | 3 | 0.000287665 |
| Glycine max | Gm10 | 2 | CH_gma_257 | 4 | 4 | 0.00000577599 |
| Glycine max | Gm03 | 2 | CH_gma_587 | 4 | 9 | 0.000718473 |
| Glycine max | Gm13 | 2 | CH_gma_61 | 7 | 9 | 0.0000000000065842 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_239 | 6 | 63 | 0.0000143946 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_116 | 4 | 5 | 0.0000000887998 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_649 | 4 | 29 | 0.000811418 |
| Phyllostachys edulis | hic_scaffold_10 | 2 | CH_ped_248 | 4 | 6 | 0.0000175137 |
| Phyllostachys edulis | hic_scaffold_18 | 2 | CH_ped_451 | 3 | 3 | 0.00053747 |
| Panicum hallii | Chr09 | 2 | CH_pha_341 | 3 | 3 | 0.00024266 |
| Populus trichocarpa | Chr02 | 2 | CH_ptr_234 | 4 | 4 | 0.0000020928 |
| Populus trichocarpa | Chr14 | 2 | CH_ptr_263 | 4 | 5 | 0.0000104409 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_522 | 3 | 3 | 0.000762218 |
| Populus trichocarpa | Chr03 | 2 | CH_ptr_523 | 3 | 3 | 0.000762218 |
| Populus trichocarpa | Chr05 | 2 | CH_ptr_524 | 3 | 3 | 0.000762218 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_525 | 3 | 3 | 0.000762218 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_241 | 4 | 4 | 0.000000204072 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_1337 | 3 | 5 | 0.000504341 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_191 | 7 | 13 | 0.0000000000000815823 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_671 | 4 | 10 | 0.0000107991 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_973 | 3 | 3 | 0.000050514 |
| Setaria italica | scaffold_9 | 2 | CH_sit_380 | 3 | 3 | 0.000264783 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_198 | 4 | 4 | 0.0000011148 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_497 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_498 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_499 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_500 | 3 | 3 | 0.000474808 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_501 | 3 | 3 | 0.000474808 |
| Saccharum spontaneum | Chr2D | 2 | CH_ssp_1032 | 3 | 4 | 0.000374518 |
| Setaria viridis | Chr_09 | 2 | CH_svi_377 | 3 | 3 | 0.000195644 |
| Triticum dicoccoides | 6A | 2 | CH_tdi_478 | 3 | 3 | 0.000255006 |
| Triticum turgidum | chr6A | 2 | CH_ttu_579 | 3 | 3 | 0.000244173 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00004.1 | 2 | CH_zjn_89 | 4 | 8 | 0.0000295553 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |