Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Sequoiadendron giganteum chr2 1 CH_sgi_685 3 3 0.0000194225
Triticum aestivum Chr3D 1 CH_tae_1119 4 7 0.00017369
Triticum aestivum Chr3A 1 CH_tae_299 6 7 0.000000000233295
Triticum aestivum Chr3B 1 CH_tae_300 6 7 0.000000000233295
Triticum turgidum chr3A 1 CH_ttu_208 5 6 0.0000000463694
Sequoiadendron giganteum chr2 2 CH_sgi_685 3 3 0.0000194225
Triticum aestivum Chr3D 2 CH_tae_1119 4 7 0.00017369
Triticum aestivum Chr3A 2 CH_tae_299 6 7 0.000000000233295
Triticum aestivum Chr3B 2 CH_tae_300 6 7 0.000000000233295
Triticum turgidum chr3A 2 CH_ttu_208 5 6 0.0000000463694

Available child term results

Ontology identifier Description Number of clusters
15.5.4.1 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (bZIP) 4
15.5.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (DOG) 8
15.5.4.3 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (HY5) 2
15.5.4.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcriptional co-activator (BOP) 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001