Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Calamus simplicifolius scaffold280 1 CH_calsi_114 4 4 0.00000401332
Hordeum vulgare chr7H 1 CH_hvu_157 5 9 0.000000201745
Sequoiadendron giganteum chr5 1 CH_sgi_67 13 22 8.1981e-24
Calamus simplicifolius scaffold280 2 CH_calsi_114 4 4 0.00000401332
Hordeum vulgare chr7H 2 CH_hvu_157 5 9 0.000000201745
Sequoiadendron giganteum chr5 2 CH_sgi_67 13 22 8.1981e-24

Available child term results

Ontology identifier Description Number of clusters
15.5.3.1 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II) 26
15.5.3.10 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PINTOX) 2
15.5.3.11 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (NDX) 2
15.5.3.12 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD) 18
15.5.3.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV) 62
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX) 12
15.5.3.5 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (BEL) 2
15.5.3.6 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (WOX) 14
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD) 6
15.5.3.9 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (LD) 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001