Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr3 | 1 | CH_asa_288 | 3 | 3 | 0.0000045597 |
| Aegilops tauschii | 2D | 1 | CH_ata_168 | 3 | 3 | 0.0000132903 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_208 | 4 | 21 | 0.0000247104 |
| Amborella trichopoda | AmTr_v1.0_scaffold00160 | 1 | CH_atr_71 | 4 | 5 | 0.000000023003 |
| Eragrostis curvula | 2 | 1 | CH_ecu_238 | 4 | 6 | 0.0000000391864 |
| Eragrostis curvula | 6 | 1 | CH_ecu_35 | 8 | 13 | 8.33242e-20 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_229 | 3 | 3 | 0.0000111053 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_283 | 3 | 4 | 0.0000444014 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_136 | 4 | 5 | 0.0000000217283 |
| Miscanthus sinensis | Chr10 | 1 | CH_msi_65 | 5 | 5 | 0.0000000000403636 |
| Setaria italica | scaffold_8 | 1 | CH_sit_261 | 3 | 3 | 0.0000330764 |
| Selaginella moellendorffii | scaffold_41 | 1 | CH_smo_133 | 3 | 4 | 0.000312674 |
| Selaginella moellendorffii | scaffold_111 | 1 | CH_smo_20 | 5 | 5 | 0.000000000158661 |
| Spirodela polyrhiza | pseudo14 | 1 | CH_spo_106 | 3 | 3 | 0.000040515 |
| Setaria viridis | Chr_08 | 1 | CH_svi_249 | 3 | 3 | 0.0000291597 |
| Triticum aestivum | Chr3A | 1 | CH_tae_1027 | 3 | 3 | 0.0000848782 |
| Triticum aestivum | Chr2A | 1 | CH_tae_323 | 5 | 6 | 0.000000000414587 |
| Triticum aestivum | Chr2B | 1 | CH_tae_508 | 4 | 4 | 0.000000077009 |
| Triticum aestivum | Chr3B | 1 | CH_tae_509 | 4 | 4 | 0.000000077009 |
| Triticum aestivum | Chr2D | 1 | CH_tae_607 | 4 | 5 | 0.000000384765 |
| Triticum turgidum | chr2B | 1 | CH_ttu_201 | 4 | 4 | 0.000000033639 |
| Triticum turgidum | chr3A | 1 | CH_ttu_461 | 3 | 3 | 0.000040615 |
| Triticum turgidum | chr2A | 1 | CH_ttu_533 | 3 | 4 | 0.000162356 |
| Allium sativum | chr3 | 2 | CH_asa_288 | 3 | 3 | 0.0000045597 |
| Aegilops tauschii | 2D | 2 | CH_ata_168 | 3 | 3 | 0.0000132903 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_208 | 4 | 21 | 0.0000247104 |
| Amborella trichopoda | AmTr_v1.0_scaffold00160 | 2 | CH_atr_71 | 4 | 5 | 0.000000023003 |
| Eragrostis curvula | 2 | 2 | CH_ecu_238 | 4 | 6 | 0.0000000391864 |
| Eragrostis curvula | 6 | 2 | CH_ecu_35 | 8 | 13 | 8.33242e-20 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_229 | 3 | 3 | 0.0000111053 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_283 | 3 | 4 | 0.0000444014 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_136 | 4 | 5 | 0.0000000217283 |
| Miscanthus sinensis | Chr10 | 2 | CH_msi_65 | 5 | 5 | 0.0000000000403636 |
| Setaria italica | scaffold_8 | 2 | CH_sit_261 | 3 | 3 | 0.0000330764 |
| Selaginella moellendorffii | scaffold_41 | 2 | CH_smo_133 | 3 | 4 | 0.000312674 |
| Selaginella moellendorffii | scaffold_111 | 2 | CH_smo_20 | 5 | 5 | 0.000000000158661 |
| Spirodela polyrhiza | pseudo14 | 2 | CH_spo_106 | 3 | 3 | 0.000040515 |
| Setaria viridis | Chr_08 | 2 | CH_svi_249 | 3 | 3 | 0.0000291597 |
| Triticum aestivum | Chr3A | 2 | CH_tae_1027 | 3 | 3 | 0.0000848782 |
| Triticum aestivum | Chr2A | 2 | CH_tae_323 | 5 | 6 | 0.000000000414587 |
| Triticum aestivum | Chr2B | 2 | CH_tae_508 | 4 | 4 | 0.000000077009 |
| Triticum aestivum | Chr3B | 2 | CH_tae_509 | 4 | 4 | 0.000000077009 |
| Triticum aestivum | Chr2D | 2 | CH_tae_607 | 4 | 5 | 0.000000384765 |
| Triticum turgidum | chr2B | 2 | CH_ttu_201 | 4 | 4 | 0.000000033639 |
| Triticum turgidum | chr3A | 2 | CH_ttu_461 | 3 | 3 | 0.000040615 |
| Triticum turgidum | chr2A | 2 | CH_ttu_533 | 3 | 4 | 0.000162356 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |