Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (REM)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 1 | CH_aag_36 | 3 | 4 | 0.000000772869 |
| Allium sativum | chr3 | 1 | CH_asa_289 | 3 | 3 | 0.0000045597 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_12 | 9 | 14 | 5.27855e-19 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_24 | 8 | 23 | 0.000000000000116034 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_382 | 3 | 4 | 0.00048598 |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_224 | 3 | 11 | 0.000155037 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_187 | 5 | 13 | 0.000000001253 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_701 | 3 | 7 | 0.000203435 |
| Digitaria exilis | Dexi_CM05836_chr09B | 1 | CH_dex_280 | 3 | 3 | 0.00000190995 |
| Digitaria exilis | Dexi_CM05836_chr03B | 1 | CH_dex_281 | 3 | 3 | 0.00000190995 |
| Eragrostis curvula | 6 | 1 | CH_ecu_77 | 8 | 46 | 0.0000000000000167107 |
| Lolium perenne | Lp_chr1_0 | 1 | CH_lpe_108 | 4 | 9 | 0.0000000383747 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_233 | 3 | 6 | 0.00000247594 |
| Miscanthus sinensis | Chr15 | 1 | CH_msi_261 | 3 | 4 | 0.0000060266 |
| Oryza sativa Kitaake | Chr3 | 1 | CH_osak_328 | 3 | 13 | 0.000113992 |
| Panicum hallii | Chr03 | 1 | CH_pha_75 | 4 | 5 | 0.00000000145684 |
| Populus trichocarpa | Chr09 | 1 | CH_ptr_145 | 4 | 4 | 0.00000000866137 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_243 | 5 | 39 | 0.00000311376 |
| Sorghum bicolor | Chr08 | 1 | CH_sbi_227 | 3 | 4 | 0.00000939407 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_301 | 3 | 7 | 0.0000821258 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_373 | 3 | 3 | 0.00000629345 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_424 | 3 | 4 | 0.0000251642 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_121 | 8 | 32 | 6.45762e-18 |
| Setaria italica | scaffold_3 | 1 | CH_sit_89 | 4 | 5 | 0.00000000145177 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_100 | 5 | 12 | 0.000000000435319 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_228 | 3 | 3 | 0.000003514 |
| Saccharum spontaneum | Chr2D | 1 | CH_ssp_490 | 3 | 4 | 0.00000785409 |
| Saccharum spontaneum | Chr2C | 1 | CH_ssp_491 | 3 | 4 | 0.00000785409 |
| Setaria viridis | Chr_03 | 1 | CH_svi_102 | 4 | 6 | 0.0000000045692 |
| Setaria viridis | Chr_09 | 1 | CH_svi_383 | 3 | 12 | 0.000256452 |
| Triticum aestivum | Chr5B | 1 | CH_tae_1029 | 3 | 4 | 0.0000874414 |
| Triticum aestivum | Chr4D | 1 | CH_tae_1030 | 3 | 4 | 0.0000874414 |
| Triticum aestivum | Chr5D | 1 | CH_tae_451 | 4 | 4 | 0.0000000124782 |
| Triticum aestivum | Chr4A | 1 | CH_tae_556 | 4 | 6 | 0.000000187001 |
| Triticum aestivum | Chr2B | 1 | CH_tae_921 | 3 | 3 | 0.0000218699 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_316 | 3 | 4 | 0.0000106988 |
| Triticum turgidum | chr4A | 1 | CH_ttu_275 | 4 | 9 | 0.00000067835 |
| Triticum turgidum | chr5B | 1 | CH_ttu_401 | 3 | 3 | 0.0000104614 |
| Anthoceros agrestis | Sc2ySwM_344 | 2 | CH_aag_36 | 3 | 4 | 0.000000772869 |
| Allium sativum | chr3 | 2 | CH_asa_289 | 3 | 3 | 0.0000045597 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_12 | 9 | 14 | 5.27855e-19 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_24 | 8 | 23 | 0.000000000000116034 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_382 | 3 | 4 | 0.00048598 |
| Brachypodium distachyon | Bd4 | 2 | CH_bdi_224 | 3 | 11 | 0.000155037 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_187 | 5 | 13 | 0.000000001253 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_701 | 3 | 7 | 0.000203435 |
| Digitaria exilis | Dexi_CM05836_chr09B | 2 | CH_dex_280 | 3 | 3 | 0.00000190995 |
| Digitaria exilis | Dexi_CM05836_chr03B | 2 | CH_dex_281 | 3 | 3 | 0.00000190995 |
| Eragrostis curvula | 6 | 2 | CH_ecu_77 | 8 | 46 | 0.0000000000000167107 |
| Lolium perenne | Lp_chr1_0 | 2 | CH_lpe_108 | 4 | 9 | 0.0000000383747 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_233 | 3 | 6 | 0.00000247594 |
| Miscanthus sinensis | Chr15 | 2 | CH_msi_261 | 3 | 4 | 0.0000060266 |
| Oryza sativa Kitaake | Chr3 | 2 | CH_osak_328 | 3 | 13 | 0.000113992 |
| Panicum hallii | Chr03 | 2 | CH_pha_75 | 4 | 5 | 0.00000000145684 |
| Populus trichocarpa | Chr09 | 2 | CH_ptr_145 | 4 | 4 | 0.00000000866137 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_243 | 5 | 39 | 0.00000311376 |
| Sorghum bicolor | Chr08 | 2 | CH_sbi_227 | 3 | 4 | 0.00000939407 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_301 | 3 | 7 | 0.0000821258 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_373 | 3 | 3 | 0.00000629345 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_424 | 3 | 4 | 0.0000251642 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_121 | 8 | 32 | 6.45762e-18 |
| Setaria italica | scaffold_3 | 2 | CH_sit_89 | 4 | 5 | 0.00000000145177 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_100 | 5 | 12 | 0.000000000435319 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_228 | 3 | 3 | 0.000003514 |
| Saccharum spontaneum | Chr2D | 2 | CH_ssp_490 | 3 | 4 | 0.00000785409 |
| Saccharum spontaneum | Chr2C | 2 | CH_ssp_491 | 3 | 4 | 0.00000785409 |
| Setaria viridis | Chr_03 | 2 | CH_svi_102 | 4 | 6 | 0.0000000045692 |
| Setaria viridis | Chr_09 | 2 | CH_svi_383 | 3 | 12 | 0.000256452 |
| Triticum aestivum | Chr5B | 2 | CH_tae_1029 | 3 | 4 | 0.0000874414 |
| Triticum aestivum | Chr4D | 2 | CH_tae_1030 | 3 | 4 | 0.0000874414 |
| Triticum aestivum | Chr5D | 2 | CH_tae_451 | 4 | 4 | 0.0000000124782 |
| Triticum aestivum | Chr4A | 2 | CH_tae_556 | 4 | 6 | 0.000000187001 |
| Triticum aestivum | Chr2B | 2 | CH_tae_921 | 3 | 3 | 0.0000218699 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_316 | 3 | 4 | 0.0000106988 |
| Triticum turgidum | chr4A | 2 | CH_ttu_275 | 4 | 9 | 0.00000067835 |
| Triticum turgidum | chr5B | 2 | CH_ttu_401 | 3 | 3 | 0.0000104614 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |