Functional clusters

Information

  • Type Gene Ontology
  • Description localization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 3 CH_acertr_329 14 29 0.0000751172
Acer truncatum chr8 3 CH_acertr_421 22 77 0.00039012
Cicer arietinum L. Ca_LG6_v3 3 CH_car_168 10 15 0.000301836
Fragaria vesca Fvb2 3 CH_fve_376 18 64 0.00079009
Gossypium hirsutum A03 3 CH_ghi_608 22 72 0.000506377
Lupinus albus Lalb_Chr20 3 CH_lal_200 11 13 0.0000141846
Lupinus albus Lalb_Chr14 3 CH_lal_317 8 8 0.000254772
Lonicera japonica GWHAAZE00000002 3 CH_lonja_583 12 24 0.000846504
Magnolia biondii Chr07 3 CH_mbi_318 14 31 0.00000580574
Magnolia biondii Chr04 3 CH_mbi_371 19 65 0.0000240541
Pisum sativum chr7LG7 3 CH_psa_337 17 56 0.000435278
Sapria himalayana scaffold11_13529635 3 CH_shi_30 19 68 0.000000000113926
Zea mays 3 3 CH_zma_276 9 10 0.000370668
Acer truncatum chr2 4 CH_acertr_329 14 29 0.0000751172
Acer truncatum chr8 4 CH_acertr_421 22 77 0.00039012
Cicer arietinum L. Ca_LG6_v3 4 CH_car_168 10 15 0.000301836
Fragaria vesca Fvb2 4 CH_fve_376 18 64 0.00079009
Gossypium hirsutum A03 4 CH_ghi_608 22 72 0.000506377
Lupinus albus Lalb_Chr20 4 CH_lal_200 11 13 0.0000141846
Lupinus albus Lalb_Chr14 4 CH_lal_317 8 8 0.000254772
Lonicera japonica GWHAAZE00000002 4 CH_lonja_583 12 24 0.000846504
Magnolia biondii Chr07 4 CH_mbi_318 14 31 0.00000580574
Magnolia biondii Chr04 4 CH_mbi_371 19 65 0.0000240541
Pisum sativum chr7LG7 4 CH_psa_337 17 56 0.000435278
Sapria himalayana scaffold11_13529635 4 CH_shi_30 19 68 0.000000000113926
Zea mays 3 4 CH_zma_276 9 10 0.000370668

Available child term results

Ontology identifier Description Number of clusters
GO:0000055 ribosomal large subunit export from nucleus 38
GO:0000056 ribosomal small subunit export from nucleus 22
GO:0000132 establishment of mitotic spindle orientation 2
GO:0000301 retrograde transport, vesicle recycling within Golgi 2
GO:0003333 amino acid transmembrane transport 4
GO:0003352 regulation of cilium movement 2
GO:0006405 RNA export from nucleus 16
GO:0006406 mRNA export from nucleus 4
GO:0006408 snRNA export from nucleus 8
GO:0006409 tRNA export from nucleus 2
GO:0006605 protein targeting 10
GO:0006606 protein import into nucleus 54
GO:0006611 protein export from nucleus 16
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 14
GO:0006621 protein retention in ER lumen 22
GO:0006623 protein targeting to vacuole 12
GO:0006625 protein targeting to peroxisome 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006810 transport 4
GO:0006811 ion transport 22
GO:0006812 cation transport 8
GO:0006813 potassium ion transport 2
GO:0006814 sodium ion transport 10
GO:0006817 phosphate ion transport 100
GO:0006824 cobalt ion transport 2
GO:0006825 copper ion transport 30
GO:0006826 iron ion transport 2
GO:0006829 zinc ion transport 4
GO:0006833 water transport 4
GO:0006835 dicarboxylic acid transport 2
GO:0006839 mitochondrial transport 2
GO:0006848 pyruvate transport 8
GO:0006849 plasma membrane pyruvate transport 4
GO:0006850 mitochondrial pyruvate transmembrane transport 24
GO:0006851 mitochondrial calcium ion transmembrane transport 16
GO:0006857 oligopeptide transport 14
GO:0006862 nucleotide transport 8
GO:0006863 purine nucleobase transport 4
GO:0006865 amino acid transport 22
GO:0006869 lipid transport 320
GO:0006880 intracellular sequestering of iron ion 60
GO:0006886 intracellular protein transport 6
GO:0006887 exocytosis 16
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 6
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 2
GO:0006891 intra-Golgi vesicle-mediated transport 10
GO:0006892 post-Golgi vesicle-mediated transport 4
GO:0006893 Golgi to plasma membrane transport 12
GO:0006895 Golgi to endosome transport 2
GO:0006897 endocytosis 2
GO:0006904 vesicle docking involved in exocytosis 4
GO:0006913 nucleocytoplasmic transport 10
GO:0007034 vacuolar transport 16
GO:0008333 endosome to lysosome transport 2
GO:0008643 carbohydrate transport 62
GO:0009306 protein secretion 2
GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system 2
GO:0009859 pollen hydration 12
GO:0009904 chloroplast accumulation movement 2
GO:0009915 phloem sucrose loading 2
GO:0010155 regulation of proton transport 26
GO:0010184 cytokinin transport 18
GO:0010315 auxin efflux 16
GO:0010351 lithium ion transport 2
GO:0010359 regulation of anion channel activity 22
GO:0010381 peroxisome-chloroplast membrane tethering 4
GO:0010497 plasmodesmata-mediated intercellular transport 8
GO:0010540 basipetal auxin transport 6
GO:0010541 acropetal auxin transport 10
GO:0010585 glutamine secretion 26
GO:0015031 protein transport 12
GO:0015670 carbon dioxide transport 2
GO:0015671 oxygen transport 12
GO:0015675 nickel cation transport 20
GO:0015689 molybdate ion transport 18
GO:0015690 aluminum cation transport 36
GO:0015691 cadmium ion transport 2
GO:0015692 lead ion transport 4
GO:0015693 magnesium ion transport 2
GO:0015696 ammonium transport 22
GO:0015703 chromate transport 2
GO:0015706 nitrate transport 8
GO:0015707 nitrite transport 76
GO:0015711 organic anion transport 2
GO:0015717 triose phosphate transport 6
GO:0015727 lactate transport 4
GO:0015739 sialic acid transport 2
GO:0015743 malate transport 116
GO:0015749 monosaccharide transmembrane transport 6
GO:0015757 galactose transmembrane transport 14
GO:0015760 glucose-6-phosphate transport 2
GO:0015768 maltose transport 2
GO:0015770 sucrose transport 22
GO:0015774 polysaccharide transport 8
GO:0015783 GDP-fucose transmembrane transport 2
GO:0015786 UDP-glucose transmembrane transport 2
GO:0015798 myo-inositol transport 4
GO:0015801 aromatic amino acid transport 8
GO:0015802 basic amino acid transport 8
GO:0015809 arginine transport 14
GO:0015813 L-glutamate transmembrane transport 6
GO:0015822 ornithine transport 16
GO:0015824 proline transport 32
GO:0015827 tryptophan transport 2
GO:0015839 cadaverine transport 20
GO:0015840 urea transport 4
GO:0015843 methylammonium transport 34
GO:0015849 organic acid transport 2
GO:0015850 organic hydroxy compound transport 2
GO:0015853 adenine transport 2
GO:0015857 uracil transport 4
GO:0015858 nucleoside transport 4
GO:0015860 purine nucleoside transmembrane transport 2
GO:0015864 pyrimidine nucleoside transport 82
GO:0015865 purine nucleotide transport 8
GO:0015884 folic acid transport 16
GO:0015886 heme transport 12
GO:0015908 fatty acid transport 2
GO:0015919 peroxisomal membrane transport 18
GO:0015986 ATP synthesis coupled proton transport 22
GO:0015990 electron transport coupled proton transport 2
GO:0016031 tRNA import into mitochondrion 4
GO:0016192 vesicle-mediated transport 16
GO:0016197 endosomal transport 4
GO:0016560 protein import into peroxisome matrix, docking 12
GO:0016973 poly(A)+ mRNA export from nucleus 8
GO:0017038 protein import 10
GO:0017121 plasma membrane phospholipid scrambling 10
GO:0019750 chloroplast localization 2
GO:0019915 lipid storage 2
GO:0030001 metal ion transport 48
GO:0030150 protein import into mitochondrial matrix 6
GO:0030581 symbiont intracellular protein transport in host 14
GO:0032119 sequestering of zinc ion 2
GO:0032366 intracellular sterol transport 10
GO:0032367 intracellular cholesterol transport 28
GO:0032456 endocytic recycling 18
GO:0033036 macromolecule localization 6
GO:0033214 siderophore-dependent iron import into cell 26
GO:0034197 triglyceride transport 2
GO:0034203 glycolipid translocation 2
GO:0034220 ion transmembrane transport 8
GO:0034394 protein localization to cell surface 2
GO:0034504 protein localization to nucleus 2
GO:0034635 glutathione transport 10
GO:0034755 iron ion transmembrane transport 2
GO:0034756 regulation of iron ion transport 14
GO:0034758 positive regulation of iron ion transport 8
GO:0034775 glutathione transmembrane transport 18
GO:0035344 hypoxanthine transport 2
GO:0035434 copper ion transmembrane transport 28
GO:0035435 phosphate ion transmembrane transport 8
GO:0035442 dipeptide transmembrane transport 2
GO:0035494 SNARE complex disassembly 32
GO:0035652 clathrin-coated vesicle cargo loading 4
GO:0035672 oligopeptide transmembrane transport 26
GO:0035721 intraciliary retrograde transport 2
GO:0042147 retrograde transport, endosome to Golgi 4
GO:0042306 regulation of protein import into nucleus 10
GO:0042886 amide transport 2
GO:0042906 xanthine transport 48
GO:0042908 xenobiotic transport 14
GO:0042938 dipeptide transport 20
GO:0042939 tripeptide transport 8
GO:0042946 glucoside transport 22
GO:0043266 regulation of potassium ion transport 4
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0044070 regulation of anion transport 8
GO:0044766 multi-organism transport 2
GO:0045036 protein targeting to chloroplast 2
GO:0045040 protein insertion into mitochondrial outer membrane 14
GO:0045048 protein insertion into ER membrane 4
GO:0045053 protein retention in Golgi apparatus 2
GO:0045056 transcytosis 2
GO:0045176 apical protein localization 2
GO:0045184 establishment of protein localization 2
GO:0045185 maintenance of protein location 2
GO:0045324 late endosome to vacuole transport 2
GO:0046713 borate transport 2
GO:0046741 transport of virus in host, tissue to tissue 40
GO:0046865 terpenoid transport 34
GO:0046907 intracellular transport 2
GO:0048193 Golgi vesicle transport 2
GO:0048208 COPII vesicle coating 56
GO:0048227 plasma membrane to endosome transport 6
GO:0048250 iron import into the mitochondrion 2
GO:0048280 vesicle fusion with Golgi apparatus 8
GO:0048312 intracellular distribution of mitochondria 4
GO:0050482 arachidonic acid secretion 22
GO:0051168 nuclear export 14
GO:0051169 nuclear transport 6
GO:0051205 protein insertion into membrane 2
GO:0051208 sequestering of calcium ion 14
GO:0051234 establishment of localization 8
GO:0051235 maintenance of location 2
GO:0051238 sequestering of metal ion 12
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 4
GO:0051457 maintenance of protein location in nucleus 2
GO:0051469 vesicle fusion with vacuole 2
GO:0051503 adenine nucleotide transport 2
GO:0051640 organelle localization 2
GO:0051641 cellular localization 6
GO:0051647 nucleus localization 2
GO:0051649 establishment of localization in cell 2
GO:0051650 establishment of vesicle localization 2
GO:0051651 maintenance of location in cell 2
GO:0051656 establishment of organelle localization 2
GO:0051665 membrane raft localization 2
GO:0051668 localization within membrane 2
GO:0051928 positive regulation of calcium ion transport 10
GO:0051958 methotrexate transport 2
GO:0052542 defense response by callose deposition 6
GO:0052543 callose deposition in cell wall 4
GO:0052545 callose localization 2
GO:0052576 carbohydrate storage 10
GO:0055085 transmembrane transport 168
GO:0060628 regulation of ER to Golgi vesicle-mediated transport 8
GO:0060858 vesicle-mediated transport involved in floral organ abscission 2
GO:0060918 auxin transport 4
GO:0061015 snRNA import into nucleus 8
GO:0061780 mitotic cohesin loading 18
GO:0065002 intracellular protein transmembrane transport 2
GO:0070509 calcium ion import 4
GO:0070574 cadmium ion transmembrane transport 4
GO:0070676 intralumenal vesicle formation 2
GO:0070972 protein localization to endoplasmic reticulum 2
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071166 ribonucleoprotein complex localization 4
GO:0071211 protein targeting to vacuole involved in autophagy 8
GO:0071421 manganese ion transmembrane transport 6
GO:0071423 malate transmembrane transport 2
GO:0071528 tRNA re-export from nucleus 10
GO:0071562 nucleus-vacuole junction assembly 2
GO:0071577 zinc ion transmembrane transport 48
GO:0071578 zinc ion import across plasma membrane 2
GO:0071705 nitrogen compound transport 8
GO:0071805 potassium ion transmembrane transport 36
GO:0071836 nectar secretion 8
GO:0071918 urea transmembrane transport 16
GO:0072348 sulfur compound transport 14
GO:0072488 ammonium transmembrane transport 8
GO:0072530 purine-containing compound transmembrane transport 2
GO:0072583 clathrin-dependent endocytosis 2
GO:0072594 establishment of protein localization to organelle 4
GO:0072598 protein localization to chloroplast 2
GO:0072660 maintenance of protein location in plasma membrane 2
GO:0080143 regulation of amino acid export 64
GO:0080160 selenate transport 6
GO:0080162 intracellular auxin transport 92
GO:0080165 callose deposition in phloem sieve plate 4
GO:0080168 abscisic acid transport 2
GO:0080170 hydrogen peroxide transmembrane transport 8
GO:0090114 COPII-coated vesicle budding 2
GO:0090316 positive regulation of intracellular protein transport 2
GO:0090408 phloem nitrate loading 4
GO:0090414 molybdate ion export from vacuole 10
GO:0090435 protein localization to nuclear envelope 8
GO:0090449 phloem glucosinolate loading 2
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport 2
GO:0090522 vesicle tethering involved in exocytosis 26
GO:0097577 sequestering of iron ion 2
GO:0097638 L-arginine import across plasma membrane 10
GO:0098655 cation transmembrane transport 2
GO:0098661 inorganic anion transmembrane transport 2
GO:0098662 inorganic cation transmembrane transport 4
GO:0098705 copper ion import across plasma membrane 46
GO:0098711 iron ion import across plasma membrane 8
GO:0098712 L-glutamate import across plasma membrane 8
GO:0099022 vesicle tethering 4
GO:0099587 inorganic ion import across plasma membrane 2
GO:0110128 phloem sucrose unloading 6
GO:0120009 intermembrane lipid transfer 20
GO:0140021 mitochondrial ADP transmembrane transport 18
GO:0140029 exocytic process 2
GO:0140042 lipid droplet formation 2
GO:1900186 negative regulation of clathrin-dependent endocytosis 8
GO:1901017 negative regulation of potassium ion transmembrane transporter activity 10
GO:1901529 positive regulation of anion channel activity 8
GO:1901642 nucleoside transmembrane transport 44
GO:1901684 arsenate ion transmembrane transport 8
GO:1901703 protein localization involved in auxin polar transport 6
GO:1902001 fatty acid transmembrane transport 4
GO:1902009 positive regulation of toxin transport 4
GO:1902334 fructose export from vacuole to cytoplasm 2
GO:1902358 sulfate transmembrane transport 60
GO:1902476 chloride transmembrane transport 10
GO:1902600 proton transmembrane transport 4
GO:1903400 L-arginine transmembrane transport 16
GO:1903401 L-lysine transmembrane transport 4
GO:1903415 flavonoid transport from endoplasmic reticulum to plant-type vacuole 4
GO:1903424 fluoride transmembrane transport 18
GO:1903830 magnesium ion transmembrane transport 4
GO:1904659 glucose transmembrane transport 2
GO:1904823 purine nucleobase transmembrane transport 6
GO:1905011 transmembrane phosphate ion transport from cytosol to vacuole 2
GO:1905200 gibberellic acid transmembrane transport 10
GO:1905885 positive regulation of triglyceride transport 4
GO:1990052 ER to chloroplast lipid transport 14
GO:1990428 miRNA transport 2
GO:1990547 mitochondrial phosphate ion transmembrane transport 26
GO:1990569 UDP-N-acetylglucosamine transmembrane transport 4
GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane 328
GO:2000008 regulation of protein localization to cell surface 32
GO:2000012 regulation of auxin polar transport 4
GO:2000071 regulation of defense response by callose deposition 14
GO:2000369 regulation of clathrin-dependent endocytosis 2
GO:2000641 regulation of early endosome to late endosome transport 30

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001