Functional clusters

Information

  • Type Gene Ontology
  • Description nucleocytoplasmic transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cicer arietinum L. Ca_LG5_v3 3 CH_car_171 3 4 0.000331809
Cucumis sativus L. chr1 3 CH_csa_173 4 12 0.0000565365
Eucalyptus grandis Chr03 3 CH_egr_238 6 8 0.00000000000263336
Medicago truncatula chr3 3 CH_mtr_462 3 3 0.0000312496
Simmondsia chinensis GWHAASQ00000006 3 CH_sci_172 3 3 0.0000993808
Cicer arietinum L. Ca_LG5_v3 4 CH_car_171 3 4 0.000331809
Cucumis sativus L. chr1 4 CH_csa_173 4 12 0.0000565365
Eucalyptus grandis Chr03 4 CH_egr_238 6 8 0.00000000000263336
Medicago truncatula chr3 4 CH_mtr_462 3 3 0.0000312496
Simmondsia chinensis GWHAASQ00000006 4 CH_sci_172 3 3 0.0000993808

Available child term results

Ontology identifier Description Number of clusters
GO:0000055 ribosomal large subunit export from nucleus 38
GO:0000056 ribosomal small subunit export from nucleus 22
GO:0006405 RNA export from nucleus 16
GO:0006406 mRNA export from nucleus 4
GO:0006408 snRNA export from nucleus 8
GO:0006409 tRNA export from nucleus 2
GO:0006606 protein import into nucleus 54
GO:0006611 protein export from nucleus 16
GO:0016973 poly(A)+ mRNA export from nucleus 8
GO:0042306 regulation of protein import into nucleus 10
GO:0051168 nuclear export 14
GO:0061015 snRNA import into nucleus 8
GO:0071528 tRNA re-export from nucleus 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001