Functional clusters

Information

  • Type Gene Ontology
  • Description nitrite transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR03 3 CH_aox_275 2 2 0.000481193
Aquilegia oxysepala CHR01 3 CH_aox_276 2 2 0.000481193
Brassica carinata ChrB08 3 CH_bca_308 3 3 0.000000911628
Beta vulgaris Chr6_EL10_PGA_scaffold0 3 CH_bvu_58 4 6 0.00000000321676
Camellia sinensis var. sinensis Chr6 3 CH_camsi_796 2 2 0.000687821
Camellia sinensis var. sinensis Chr11 3 CH_camsi_797 2 2 0.000687821
Cannabis sativa NC_044375.1 3 CH_cansat_135 3 5 0.000000646683
Capsicum annuum PGAv.1.6.scaffold309 3 CH_can_428 2 2 0.000495663
Citrus clementina scaffold_8 3 CH_ccl_184 3 3 0.000000201881
Ceratophyllum demersum 4 3 CH_cde_149 2 2 0.000236939
Citrullus lanatus CG_Chr03 3 CH_cla_138 2 2 0.000266134
Corchorus olitorius AWUE01018461.1 3 CH_col_118 2 2 0.000876296
Carica papaya supercontig_65 3 CH_cpa_304 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2088 3 CH_cqu_214 3 3 0.00000153229
Cucumis sativus L. chr1 3 CH_csa_230 2 2 0.000250428
Davidia involucrata GWHABJS00000010 3 CH_din_407 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 3 CH_eca_44 4 5 0.0000000000474338
Erythranthe guttata scaffold_2 3 CH_egut_233 3 5 0.0000174873
Fragaria x ananassa Fvb4-3 3 CH_fan_200 4 39 0.0000011148
Fragaria vesca Fvb4 3 CH_fve_388 2 2 0.000883652
Helianthus annuus HanXRQChr01 3 CH_han_190 4 7 0.00000000433034
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_15 8 11 6.34171e-23
Magnolia biondii Chr18 3 CH_mbi_550 2 2 0.000291397
Manihot esculenta Chromosome11 3 CH_mes_186 3 4 0.000000447414
Medicago truncatula chr4 3 CH_mtr_663 2 3 0.000369764
Olea europaea chr8 3 CH_oeu_335 2 2 0.000533789
Oryza sativa ssp. japonica chr02 3 CH_osa_354 2 2 0.000158437
Petunia axillaris Peaxi162Scf00115 3 CH_pax_10 6 6 1.79255e-17
Prunus persica Pp06 3 CH_ppe_431 2 2 0.000447577
Populus trichocarpa Chr09 3 CH_ptr_433 2 2 0.000578001
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_738 2 2 0.000597979
Salvia bowleyana GWHASIU00000006 3 CH_sbo_184 3 3 0.000000108681
Salix brachista GWHAAZH00000015 3 CH_sbr_322 2 2 0.000378084
Solanum pennellii Spenn-ch11 3 CH_spe_136 3 3 0.000000103868
Solanum tuberosum ST4.03ch11 3 CH_stu_277 3 5 0.00000330801
Theobroma cacao Chromosome_9 3 CH_tca_163 3 3 0.000000281615
Tarenaya hassleriana NW_010965541.1 3 CH_tha_162 2 2 0.000419082
Zea mays 4 3 CH_zma_269 2 2 0.000306788
Aquilegia oxysepala CHR03 4 CH_aox_275 2 2 0.000481193
Aquilegia oxysepala CHR01 4 CH_aox_276 2 2 0.000481193
Brassica carinata ChrB08 4 CH_bca_308 3 3 0.000000911628
Beta vulgaris Chr6_EL10_PGA_scaffold0 4 CH_bvu_58 4 6 0.00000000321676
Camellia sinensis var. sinensis Chr6 4 CH_camsi_796 2 2 0.000687821
Camellia sinensis var. sinensis Chr11 4 CH_camsi_797 2 2 0.000687821
Cannabis sativa NC_044375.1 4 CH_cansat_135 3 5 0.000000646683
Capsicum annuum PGAv.1.6.scaffold309 4 CH_can_428 2 2 0.000495663
Citrus clementina scaffold_8 4 CH_ccl_184 3 3 0.000000201881
Ceratophyllum demersum 4 4 CH_cde_149 2 2 0.000236939
Citrullus lanatus CG_Chr03 4 CH_cla_138 2 2 0.000266134
Corchorus olitorius AWUE01018461.1 4 CH_col_118 2 2 0.000876296
Carica papaya supercontig_65 4 CH_cpa_304 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2088 4 CH_cqu_214 3 3 0.00000153229
Cucumis sativus L. chr1 4 CH_csa_230 2 2 0.000250428
Davidia involucrata GWHABJS00000010 4 CH_din_407 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 4 CH_eca_44 4 5 0.0000000000474338
Erythranthe guttata scaffold_2 4 CH_egut_233 3 5 0.0000174873
Fragaria x ananassa Fvb4-3 4 CH_fan_200 4 39 0.0000011148
Fragaria vesca Fvb4 4 CH_fve_388 2 2 0.000883652
Helianthus annuus HanXRQChr01 4 CH_han_190 4 7 0.00000000433034
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_15 8 11 6.34171e-23
Magnolia biondii Chr18 4 CH_mbi_550 2 2 0.000291397
Manihot esculenta Chromosome11 4 CH_mes_186 3 4 0.000000447414
Medicago truncatula chr4 4 CH_mtr_663 2 3 0.000369764
Olea europaea chr8 4 CH_oeu_335 2 2 0.000533789
Oryza sativa ssp. japonica chr02 4 CH_osa_354 2 2 0.000158437
Petunia axillaris Peaxi162Scf00115 4 CH_pax_10 6 6 1.79255e-17
Prunus persica Pp06 4 CH_ppe_431 2 2 0.000447577
Populus trichocarpa Chr09 4 CH_ptr_433 2 2 0.000578001
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_738 2 2 0.000597979
Salvia bowleyana GWHASIU00000006 4 CH_sbo_184 3 3 0.000000108681
Salix brachista GWHAAZH00000015 4 CH_sbr_322 2 2 0.000378084
Solanum pennellii Spenn-ch11 4 CH_spe_136 3 3 0.000000103868
Solanum tuberosum ST4.03ch11 4 CH_stu_277 3 5 0.00000330801
Theobroma cacao Chromosome_9 4 CH_tca_163 3 3 0.000000281615
Tarenaya hassleriana NW_010965541.1 4 CH_tha_162 2 2 0.000419082
Zea mays 4 4 CH_zma_269 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001