Functional clusters
Information
- Type Gene Ontology
- Description protein retention in ER lumen
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 3 | CH_amhyb_28 | 4 | 4 | 0.000000000590528 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 3 | CH_bvu_34 | 5 | 6 | 0.000000000000976793 |
| Corylus avellana | 3 | 3 | CH_cav_164 | 3 | 4 | 0.00000423146 |
| Coffea canephora | chr1 | 3 | CH_ccan_118 | 3 | 28 | 0.00000159137 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 3 | CH_cqu_224 | 3 | 3 | 0.00000229002 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 3 | CH_cqu_97 | 4 | 4 | 0.000000000759579 |
| Lupinus albus | Lalb_Chr12 | 3 | CH_lal_11 | 8 | 9 | 1.52476e-21 |
| Lupinus albus | Lalb_Chr07 | 3 | CH_lal_24 | 6 | 6 | 9.04605e-16 |
| Lotus japonicus | chr3 | 3 | CH_lja_145 | 3 | 4 | 0.00000171786 |
| Pisum sativum | chr4LG4 | 3 | CH_psa_92 | 3 | 3 | 0.000000081633 |
| Salix brachista | GWHAAZH00000017 | 3 | CH_sbr_397 | 3 | 19 | 0.000948972 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 4 | CH_amhyb_28 | 4 | 4 | 0.000000000590528 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 4 | CH_bvu_34 | 5 | 6 | 0.000000000000976793 |
| Corylus avellana | 3 | 4 | CH_cav_164 | 3 | 4 | 0.00000423146 |
| Coffea canephora | chr1 | 4 | CH_ccan_118 | 3 | 28 | 0.00000159137 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 4 | CH_cqu_224 | 3 | 3 | 0.00000229002 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 4 | CH_cqu_97 | 4 | 4 | 0.000000000759579 |
| Lupinus albus | Lalb_Chr12 | 4 | CH_lal_11 | 8 | 9 | 1.52476e-21 |
| Lupinus albus | Lalb_Chr07 | 4 | CH_lal_24 | 6 | 6 | 9.04605e-16 |
| Lotus japonicus | chr3 | 4 | CH_lja_145 | 3 | 4 | 0.00000171786 |
| Pisum sativum | chr4LG4 | 4 | CH_psa_92 | 3 | 3 | 0.000000081633 |
| Salix brachista | GWHAAZH00000017 | 4 | CH_sbr_397 | 3 | 19 | 0.000948972 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |