Functional clusters

Information

  • Type Gene Ontology
  • Description transmembrane transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 3 CH_acertr_178 18 74 0.000000811931
Actinidia chinensis Lachesis_group14 3 CH_ach_191 6 7 0.000313344
Amaranthus hybridus AmaHy_arrow1_Scaffold_16 3 CH_amhyb_209 6 8 0.000808182
Aquilegia oxysepala CHR06 3 CH_aox_205 7 10 0.000134705
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 3 CH_arhy_244 9 10 0.0000000291879
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_456 8 12 0.0000402814
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 3 CH_arhy_466 9 17 0.0000575322
Amborella trichopoda AmTr_v1.0_scaffold00024 3 CH_atr_307 5 5 0.000534059
Brassica carinata ChrC08 3 CH_bca_779 6 7 0.000340147
Brassica carinata ChrC04 3 CH_bca_807 7 11 0.000422543
Brassica napus C01 3 CH_bna_214 8 9 0.000000332192
Brassica napus C09 3 CH_bna_581 7 11 0.000408466
Brassica oleracea C1 3 CH_bol_147 7 7 0.000000502732
Camellia sinensis var. sinensis Chr1 3 CH_camsi_637 7 10 0.000188904
Capsicum annuum PGAv.1.6.scaffold208 3 CH_can_42 15 17 1.18149e-16
Coffea canephora chr2 3 CH_ccan_311 4 7 0.000259824
Coffea canephora chr8 3 CH_ccan_99 8 63 0.000000358016
Citrus clementina scaffold_3 3 CH_ccl_265 10 20 0.0000223772
Carya illinoinensis Chr07 3 CH_cil_475 6 7 0.000443133
Cucumis melo chr02 3 CH_cme_256 8 16 0.000512605
Carica papaya supercontig_139 3 CH_cpa_243 7 12 0.000333106
Carica papaya supercontig_17 3 CH_cpa_248 6 8 0.000424938
Capsella rubella scaffold_3 3 CH_cru_197 6 6 0.0000352966
Cucumis sativus L. chr7 3 CH_csa_165 7 9 0.0000428256
Cucumis sativus L. chr1 3 CH_csa_205 9 20 0.000173018
Davidia involucrata GWHABJS00000019 3 CH_din_118 14 40 0.000000145502
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_240 6 7 0.0000384604
Eucalyptus grandis Chr10 3 CH_egr_888 16 77 0.000948214
Erythranthe guttata scaffold_10 3 CH_egut_148 9 10 0.0000000261018
Eutrema salsugineum scaffold_9 3 CH_esa_125 7 8 0.0000116709
Fragaria vesca Fvb5 3 CH_fve_279 14 66 0.000152962
Gossypium hirsutum A12 3 CH_ghi_279 11 21 0.00000124029
Glycine max Gm11 3 CH_gma_227 7 7 0.00000305555
Glycine max Gm17 3 CH_gma_531 7 11 0.000892274
Glycine max Gm05 3 CH_gma_532 7 11 0.000892274
Helianthus annuus HanXRQChr02 3 CH_han_269 11 20 0.000000204956
Helianthus annuus HanXRQChr17 3 CH_han_46 14 14 4.9163e-17
Helianthus annuus HanXRQChr10 3 CH_han_601 8 15 0.000268969
Lotus japonicus chr4 3 CH_lja_304 7 10 0.000382927
Lonicera japonica GWHAAZE00000005 3 CH_lonja_378 10 23 0.0000513043
Magnolia biondii Chr07 3 CH_mbi_112 11 17 0.000000000394148
Magnolia biondii Chr14 3 CH_mbi_179 9 13 0.0000000460653
Malus domestica Chr07 3 CH_mdo_195 12 24 0.0000000559716
Malus domestica Chr06 3 CH_mdo_520 8 15 0.000190251
Manihot esculenta Chromosome07 3 CH_mes_134 9 9 0.00000000327598
Medicago truncatula chr3 3 CH_mtr_155 11 14 0.0000000000515054
Medicago truncatula chr6 3 CH_mtr_363 8 11 0.00000140438
Olea europaea chr23 3 CH_oeu_33 12 21 0.000000000781003
Physcomitrium patens scaffold_30 3 CH_ppa_225 16 77 0.000732622
Pisum sativum chr4LG4 3 CH_psa_385 13 62 0.000791069
Papaver somniferum NC_039367.1 3 CH_pso_328 12 40 0.00000194338
Populus trichocarpa Chr18 3 CH_ptr_232 8 9 0.000000977317
Phaseolus vulgaris Chr01 3 CH_pvu_168 7 7 0.00000302461
Rhododendron simsii chr04 3 CH_rsi_438 6 7 0.000294936
Salvia bowleyana GWHASIU00000003 3 CH_sbo_125 12 24 0.00000000174386
Salvia bowleyana GWHASIU00000005 3 CH_sbo_138 9 11 0.00000000378812
Salix brachista GWHAAZH00000019 3 CH_sbr_227 7 9 0.0000526084
Salix brachista GWHAAZH00000018 3 CH_sbr_32 16 24 0.0000000000000458432
Simmondsia chinensis GWHAASQ00000007 3 CH_sci_23 10 10 0.000000000079965
Simmondsia chinensis GWHAASQ00000005 3 CH_sci_41 9 10 0.0000000217672
Sechium edule LG08 3 CH_sed_285 7 11 0.000759204
Sequoiadendron giganteum chr9 3 CH_sgi_1154 9 20 0.000151472
Sequoiadendron giganteum chr6 3 CH_sgi_1194 6 7 0.000272329
Sequoiadendron giganteum chr3 3 CH_sgi_1247 7 11 0.000370627
Sequoiadendron giganteum chr10 3 CH_sgi_438 11 15 0.0000000014718
Sequoiadendron giganteum chr10 3 CH_sgi_629 11 20 0.000000156588
Sequoiadendron giganteum chr1 3 CH_sgi_651 19 80 0.000000202789
Sequoiadendron giganteum chr6 3 CH_sgi_848 7 8 0.00000976754
Solanum lycopersicum SL4.0ch06 3 CH_sly_185 8 8 0.000000325278
Solanum lycopersicum SL4.0ch12 3 CH_sly_452 6 6 0.000185802
Solanum lycopersicum SL4.0ch05 3 CH_sly_55 16 20 0.0000000000000122823
Selaginella moellendorffii scaffold_19 3 CH_smo_135 15 74 0.000197119
Solanum pennellii Spenn-ch03 3 CH_spe_258 11 38 0.0000257446
Solanum pennellii Spenn-ch05 3 CH_spe_353 6 8 0.000169379
Solanum pennellii Spenn-ch06 3 CH_spe_354 6 8 0.000169379
Trochodendron aralioides group7 3 CH_tar_236 9 16 0.0000246058
Theobroma cacao Chromosome_3 3 CH_tca_243 7 9 0.0000394916
Trifolium pratense Tp57577_TGAC_v2_LG5 3 CH_tpr_230 6 6 0.0000862226
Trifolium pratense Tp57577_TGAC_v2_LG3 3 CH_tpr_309 7 10 0.000358489
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_113 8 8 0.000000205907
Vanilla planifolia CM028153.1 3 CH_vpl_147 7 8 0.0000112689
Vanilla planifolia CM028159.1 3 CH_vpl_343 11 37 0.000724187
Vanilla planifolia CM028152.1 3 CH_vpl_45 17 46 0.00000000193893
Vanilla planifolia CM028163.1 3 CH_vpl_71 8 8 0.0000000493019
Acer truncatum chr12 4 CH_acertr_178 18 74 0.000000811931
Actinidia chinensis Lachesis_group14 4 CH_ach_191 6 7 0.000313344
Amaranthus hybridus AmaHy_arrow1_Scaffold_16 4 CH_amhyb_209 6 8 0.000808182
Aquilegia oxysepala CHR06 4 CH_aox_205 7 10 0.000134705
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 4 CH_arhy_244 9 10 0.0000000291879
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_456 8 12 0.0000402814
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 4 CH_arhy_466 9 17 0.0000575322
Amborella trichopoda AmTr_v1.0_scaffold00024 4 CH_atr_307 5 5 0.000534059
Brassica carinata ChrC08 4 CH_bca_779 6 7 0.000340147
Brassica carinata ChrC04 4 CH_bca_807 7 11 0.000422543
Brassica napus C01 4 CH_bna_214 8 9 0.000000332192
Brassica napus C09 4 CH_bna_581 7 11 0.000408466
Brassica oleracea C1 4 CH_bol_147 7 7 0.000000502732
Camellia sinensis var. sinensis Chr1 4 CH_camsi_637 7 10 0.000188904
Capsicum annuum PGAv.1.6.scaffold208 4 CH_can_42 15 17 1.18149e-16
Coffea canephora chr2 4 CH_ccan_311 4 7 0.000259824
Coffea canephora chr8 4 CH_ccan_99 8 63 0.000000358016
Citrus clementina scaffold_3 4 CH_ccl_265 10 20 0.0000223772
Carya illinoinensis Chr07 4 CH_cil_475 6 7 0.000443133
Cucumis melo chr02 4 CH_cme_256 8 16 0.000512605
Carica papaya supercontig_139 4 CH_cpa_243 7 12 0.000333106
Carica papaya supercontig_17 4 CH_cpa_248 6 8 0.000424938
Capsella rubella scaffold_3 4 CH_cru_197 6 6 0.0000352966
Cucumis sativus L. chr7 4 CH_csa_165 7 9 0.0000428256
Cucumis sativus L. chr1 4 CH_csa_205 9 20 0.000173018
Davidia involucrata GWHABJS00000019 4 CH_din_118 14 40 0.000000145502
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_240 6 7 0.0000384604
Eucalyptus grandis Chr10 4 CH_egr_888 16 77 0.000948214
Erythranthe guttata scaffold_10 4 CH_egut_148 9 10 0.0000000261018
Eutrema salsugineum scaffold_9 4 CH_esa_125 7 8 0.0000116709
Fragaria vesca Fvb5 4 CH_fve_279 14 66 0.000152962
Gossypium hirsutum A12 4 CH_ghi_279 11 21 0.00000124029
Glycine max Gm11 4 CH_gma_227 7 7 0.00000305555
Glycine max Gm17 4 CH_gma_531 7 11 0.000892274
Glycine max Gm05 4 CH_gma_532 7 11 0.000892274
Helianthus annuus HanXRQChr02 4 CH_han_269 11 20 0.000000204956
Helianthus annuus HanXRQChr17 4 CH_han_46 14 14 4.9163e-17
Helianthus annuus HanXRQChr10 4 CH_han_601 8 15 0.000268969
Lotus japonicus chr4 4 CH_lja_304 7 10 0.000382927
Lonicera japonica GWHAAZE00000005 4 CH_lonja_378 10 23 0.0000513043
Magnolia biondii Chr07 4 CH_mbi_112 11 17 0.000000000394148
Magnolia biondii Chr14 4 CH_mbi_179 9 13 0.0000000460653
Malus domestica Chr07 4 CH_mdo_195 12 24 0.0000000559716
Malus domestica Chr06 4 CH_mdo_520 8 15 0.000190251
Manihot esculenta Chromosome07 4 CH_mes_134 9 9 0.00000000327598
Medicago truncatula chr3 4 CH_mtr_155 11 14 0.0000000000515054
Medicago truncatula chr6 4 CH_mtr_363 8 11 0.00000140438
Olea europaea chr23 4 CH_oeu_33 12 21 0.000000000781003
Physcomitrium patens scaffold_30 4 CH_ppa_225 16 77 0.000732622
Pisum sativum chr4LG4 4 CH_psa_385 13 62 0.000791069
Papaver somniferum NC_039367.1 4 CH_pso_328 12 40 0.00000194338
Populus trichocarpa Chr18 4 CH_ptr_232 8 9 0.000000977317
Phaseolus vulgaris Chr01 4 CH_pvu_168 7 7 0.00000302461
Rhododendron simsii chr04 4 CH_rsi_438 6 7 0.000294936
Salvia bowleyana GWHASIU00000003 4 CH_sbo_125 12 24 0.00000000174386
Salvia bowleyana GWHASIU00000005 4 CH_sbo_138 9 11 0.00000000378812
Salix brachista GWHAAZH00000019 4 CH_sbr_227 7 9 0.0000526084
Salix brachista GWHAAZH00000018 4 CH_sbr_32 16 24 0.0000000000000458432
Simmondsia chinensis GWHAASQ00000007 4 CH_sci_23 10 10 0.000000000079965
Simmondsia chinensis GWHAASQ00000005 4 CH_sci_41 9 10 0.0000000217672
Sechium edule LG08 4 CH_sed_285 7 11 0.000759204
Sequoiadendron giganteum chr9 4 CH_sgi_1154 9 20 0.000151472
Sequoiadendron giganteum chr6 4 CH_sgi_1194 6 7 0.000272329
Sequoiadendron giganteum chr3 4 CH_sgi_1247 7 11 0.000370627
Sequoiadendron giganteum chr10 4 CH_sgi_438 11 15 0.0000000014718
Sequoiadendron giganteum chr10 4 CH_sgi_629 11 20 0.000000156588
Sequoiadendron giganteum chr1 4 CH_sgi_651 19 80 0.000000202789
Sequoiadendron giganteum chr6 4 CH_sgi_848 7 8 0.00000976754
Solanum lycopersicum SL4.0ch06 4 CH_sly_185 8 8 0.000000325278
Solanum lycopersicum SL4.0ch12 4 CH_sly_452 6 6 0.000185802
Solanum lycopersicum SL4.0ch05 4 CH_sly_55 16 20 0.0000000000000122823
Selaginella moellendorffii scaffold_19 4 CH_smo_135 15 74 0.000197119
Solanum pennellii Spenn-ch03 4 CH_spe_258 11 38 0.0000257446
Solanum pennellii Spenn-ch05 4 CH_spe_353 6 8 0.000169379
Solanum pennellii Spenn-ch06 4 CH_spe_354 6 8 0.000169379
Trochodendron aralioides group7 4 CH_tar_236 9 16 0.0000246058
Theobroma cacao Chromosome_3 4 CH_tca_243 7 9 0.0000394916
Trifolium pratense Tp57577_TGAC_v2_LG5 4 CH_tpr_230 6 6 0.0000862226
Trifolium pratense Tp57577_TGAC_v2_LG3 4 CH_tpr_309 7 10 0.000358489
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_113 8 8 0.000000205907
Vanilla planifolia CM028153.1 4 CH_vpl_147 7 8 0.0000112689
Vanilla planifolia CM028159.1 4 CH_vpl_343 11 37 0.000724187
Vanilla planifolia CM028152.1 4 CH_vpl_45 17 46 0.00000000193893
Vanilla planifolia CM028163.1 4 CH_vpl_71 8 8 0.0000000493019

Available child term results

Ontology identifier Description Number of clusters
GO:0003333 amino acid transmembrane transport 4
GO:0006824 cobalt ion transport 2
GO:0006849 plasma membrane pyruvate transport 4
GO:0006850 mitochondrial pyruvate transmembrane transport 24
GO:0006851 mitochondrial calcium ion transmembrane transport 16
GO:0010155 regulation of proton transport 26
GO:0010359 regulation of anion channel activity 22
GO:0015749 monosaccharide transmembrane transport 6
GO:0015757 galactose transmembrane transport 14
GO:0015783 GDP-fucose transmembrane transport 2
GO:0015786 UDP-glucose transmembrane transport 2
GO:0015813 L-glutamate transmembrane transport 6
GO:0015860 purine nucleoside transmembrane transport 2
GO:0015986 ATP synthesis coupled proton transport 22
GO:0015990 electron transport coupled proton transport 2
GO:0016031 tRNA import into mitochondrion 4
GO:0016560 protein import into peroxisome matrix, docking 12
GO:0030150 protein import into mitochondrial matrix 6
GO:0034220 ion transmembrane transport 8
GO:0034755 iron ion transmembrane transport 2
GO:0034775 glutathione transmembrane transport 18
GO:0035434 copper ion transmembrane transport 28
GO:0035435 phosphate ion transmembrane transport 8
GO:0035442 dipeptide transmembrane transport 2
GO:0035672 oligopeptide transmembrane transport 26
GO:0048250 iron import into the mitochondrion 2
GO:0065002 intracellular protein transmembrane transport 2
GO:0070574 cadmium ion transmembrane transport 4
GO:0071421 manganese ion transmembrane transport 6
GO:0071423 malate transmembrane transport 2
GO:0071577 zinc ion transmembrane transport 48
GO:0071578 zinc ion import across plasma membrane 2
GO:0071805 potassium ion transmembrane transport 36
GO:0071918 urea transmembrane transport 16
GO:0072488 ammonium transmembrane transport 8
GO:0072530 purine-containing compound transmembrane transport 2
GO:0080143 regulation of amino acid export 64
GO:0080170 hydrogen peroxide transmembrane transport 8
GO:0090414 molybdate ion export from vacuole 10
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport 2
GO:0097638 L-arginine import across plasma membrane 10
GO:0098655 cation transmembrane transport 2
GO:0098661 inorganic anion transmembrane transport 2
GO:0098662 inorganic cation transmembrane transport 4
GO:0098705 copper ion import across plasma membrane 46
GO:0098711 iron ion import across plasma membrane 8
GO:0098712 L-glutamate import across plasma membrane 8
GO:0099587 inorganic ion import across plasma membrane 2
GO:0140021 mitochondrial ADP transmembrane transport 18
GO:1901017 negative regulation of potassium ion transmembrane transporter activity 10
GO:1901529 positive regulation of anion channel activity 8
GO:1901642 nucleoside transmembrane transport 44
GO:1901684 arsenate ion transmembrane transport 8
GO:1902001 fatty acid transmembrane transport 4
GO:1902334 fructose export from vacuole to cytoplasm 2
GO:1902358 sulfate transmembrane transport 60
GO:1902476 chloride transmembrane transport 10
GO:1902600 proton transmembrane transport 4
GO:1903400 L-arginine transmembrane transport 16
GO:1903401 L-lysine transmembrane transport 4
GO:1903424 fluoride transmembrane transport 18
GO:1903830 magnesium ion transmembrane transport 4
GO:1904659 glucose transmembrane transport 2
GO:1904823 purine nucleobase transmembrane transport 6
GO:1905011 transmembrane phosphate ion transport from cytosol to vacuole 2
GO:1905200 gibberellic acid transmembrane transport 10
GO:1990547 mitochondrial phosphate ion transmembrane transport 26
GO:1990569 UDP-N-acetylglucosamine transmembrane transport 4
GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane 328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001