Functional clusters

Information

  • Type Gene Ontology
  • Description cation transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 3 CH_arhy_658 4 4 0.000611775
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_707 6 22 0.000452113
Sequoiadendron giganteum chr1 3 CH_sgi_191 12 21 0.00000000000000327197
Sequoiadendron giganteum chr1 3 CH_sgi_376 8 10 0.0000000000835307
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 4 CH_arhy_658 4 4 0.000611775
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_707 6 22 0.000452113
Sequoiadendron giganteum chr1 4 CH_sgi_191 12 21 0.00000000000000327197
Sequoiadendron giganteum chr1 4 CH_sgi_376 8 10 0.0000000000835307

Available child term results

Ontology identifier Description Number of clusters
GO:0006813 potassium ion transport 2
GO:0006814 sodium ion transport 10
GO:0006824 cobalt ion transport 2
GO:0006825 copper ion transport 30
GO:0006826 iron ion transport 2
GO:0006829 zinc ion transport 4
GO:0006851 mitochondrial calcium ion transmembrane transport 16
GO:0010155 regulation of proton transport 26
GO:0010351 lithium ion transport 2
GO:0015675 nickel cation transport 20
GO:0015690 aluminum cation transport 36
GO:0015691 cadmium ion transport 2
GO:0015692 lead ion transport 4
GO:0015693 magnesium ion transport 2
GO:0015696 ammonium transport 22
GO:0015809 arginine transport 14
GO:0015822 ornithine transport 16
GO:0015827 tryptophan transport 2
GO:0015839 cadaverine transport 20
GO:0015843 methylammonium transport 34
GO:0015886 heme transport 12
GO:0015986 ATP synthesis coupled proton transport 22
GO:0015990 electron transport coupled proton transport 2
GO:0030001 metal ion transport 48
GO:0033214 siderophore-dependent iron import into cell 26
GO:0034755 iron ion transmembrane transport 2
GO:0034756 regulation of iron ion transport 14
GO:0034758 positive regulation of iron ion transport 8
GO:0035434 copper ion transmembrane transport 28
GO:0043266 regulation of potassium ion transport 4
GO:0048250 iron import into the mitochondrion 2
GO:0051928 positive regulation of calcium ion transport 10
GO:0070509 calcium ion import 4
GO:0070574 cadmium ion transmembrane transport 4
GO:0071421 manganese ion transmembrane transport 6
GO:0071577 zinc ion transmembrane transport 48
GO:0071578 zinc ion import across plasma membrane 2
GO:0071805 potassium ion transmembrane transport 36
GO:0072488 ammonium transmembrane transport 8
GO:0097638 L-arginine import across plasma membrane 10
GO:0098655 cation transmembrane transport 2
GO:0098662 inorganic cation transmembrane transport 4
GO:0098705 copper ion import across plasma membrane 46
GO:0098711 iron ion import across plasma membrane 8
GO:1901017 negative regulation of potassium ion transmembrane transporter activity 10
GO:1902600 proton transmembrane transport 4
GO:1903400 L-arginine transmembrane transport 16
GO:1903401 L-lysine transmembrane transport 4
GO:1903830 magnesium ion transmembrane transport 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001