Functional clusters

Information

  • Type Gene Ontology
  • Description amino acid transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica rapa A06 3 CH_bra_250 3 3 0.000370593
Cucumis melo chr10 3 CH_cme_189 3 3 0.000076638
Corchorus olitorius AWUE01019136.1 3 CH_col_96 3 4 0.000417048
Daucus carota DCARv2_Chr1 3 CH_dca_128 5 9 0.000000286702
Lupinus albus Lalb_Chr23 3 CH_lal_176 4 4 0.00000380942
Lupinus albus Lalb_Chr18 3 CH_lal_207 4 5 0.0000189994
Punica granatum NC_045133.1 3 CH_pgr_44 7 9 0.000000000000543977
Quercus lobata 4 3 CH_qlo_507 4 4 0.000000836011
Quercus lobata 11 3 CH_qlo_90 9 11 1.61584e-18
Zea mays 10 3 CH_zma_217 4 9 0.000133847
Zea mays 6 3 CH_zma_42 6 8 0.000000000146246
Brassica rapa A06 4 CH_bra_250 3 3 0.000370593
Cucumis melo chr10 4 CH_cme_189 3 3 0.000076638
Corchorus olitorius AWUE01019136.1 4 CH_col_96 3 4 0.000417048
Daucus carota DCARv2_Chr1 4 CH_dca_128 5 9 0.000000286702
Lupinus albus Lalb_Chr23 4 CH_lal_176 4 4 0.00000380942
Lupinus albus Lalb_Chr18 4 CH_lal_207 4 5 0.0000189994
Punica granatum NC_045133.1 4 CH_pgr_44 7 9 0.000000000000543977
Quercus lobata 4 4 CH_qlo_507 4 4 0.000000836011
Quercus lobata 11 4 CH_qlo_90 9 11 1.61584e-18
Zea mays 10 4 CH_zma_217 4 9 0.000133847
Zea mays 6 4 CH_zma_42 6 8 0.000000000146246

Available child term results

Ontology identifier Description Number of clusters
GO:0003333 amino acid transmembrane transport 4
GO:0010585 glutamine secretion 26
GO:0015801 aromatic amino acid transport 8
GO:0015802 basic amino acid transport 8
GO:0015809 arginine transport 14
GO:0015813 L-glutamate transmembrane transport 6
GO:0015822 ornithine transport 16
GO:0015824 proline transport 32
GO:0015827 tryptophan transport 2
GO:0080143 regulation of amino acid export 64
GO:0097638 L-arginine import across plasma membrane 10
GO:0098712 L-glutamate import across plasma membrane 8
GO:1903400 L-arginine transmembrane transport 16
GO:1903401 L-lysine transmembrane transport 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001