Functional clusters
Information
- Type Gene Ontology
- Description metal ion transport
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr2 | 3 | CH_acertr_125 | 5 | 7 | 0.0000000582059 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 3 | CH_amhyb_176 | 3 | 3 | 0.000464258 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 3 | CH_atr_151 | 4 | 5 | 0.00000688119 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 3 | CH_atr_305 | 3 | 3 | 0.000518203 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 3 | CH_atr_38 | 7 | 9 | 0.000000000000850883 |
| Brassica carinata | ChrC09 | 3 | CH_bca_224 | 5 | 7 | 0.000000098858 |
| Brassica carinata | ChrB03 | 3 | CH_bca_576 | 4 | 7 | 0.0000758126 |
| Brassica oleracea | C1 | 3 | CH_bol_84 | 5 | 6 | 0.0000000089739 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 3 | CH_cqu_174 | 5 | 8 | 0.000000308793 |
| Erythranthe guttata | scaffold_13 | 3 | CH_egut_397 | 3 | 3 | 0.000653439 |
| Eutrema salsugineum | scaffold_20 | 3 | CH_esa_252 | 3 | 3 | 0.000636298 |
| Hydrangea macrophylla | Hma1.2p1_0092F.1 | 3 | CH_hma_225 | 3 | 3 | 0.000245164 |
| Lonicera japonica | GWHAAZE00000004 | 3 | CH_lonja_14 | 18 | 30 | 7.82686e-34 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_345 | 4 | 5 | 0.0000165864 |
| Medicago truncatula | chr1 | 3 | CH_mtr_515 | 4 | 9 | 0.0000607119 |
| Quercus lobata | 1 | 3 | CH_qlo_407 | 5 | 5 | 0.0000000437237 |
| Quercus lobata | 6 | 3 | CH_qlo_466 | 6 | 13 | 0.000000293102 |
| Quercus lobata | 5 | 3 | CH_qlo_737 | 4 | 5 | 0.000054107 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_878 | 4 | 5 | 0.0000167673 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_241 | 4 | 4 | 0.00000268219 |
| Schrenkiella parvula | ch1-1 | 3 | CH_spa_216 | 3 | 3 | 0.000793384 |
| Schrenkiella parvula | ch7-4 | 3 | CH_spa_65 | 4 | 4 | 0.00000243638 |
| Utricularia gibba | unitig_21 | 3 | CH_ugi_43 | 4 | 5 | 0.00000350915 |
| Vitis vinifera | chr10 | 3 | CH_vvi_424 | 3 | 3 | 0.000768585 |
| Acer truncatum | chr2 | 4 | CH_acertr_125 | 5 | 7 | 0.0000000582059 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 4 | CH_amhyb_176 | 3 | 3 | 0.000464258 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 4 | CH_atr_151 | 4 | 5 | 0.00000688119 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 4 | CH_atr_305 | 3 | 3 | 0.000518203 |
| Amborella trichopoda | AmTr_v1.0_scaffold00203 | 4 | CH_atr_38 | 7 | 9 | 0.000000000000850883 |
| Brassica carinata | ChrC09 | 4 | CH_bca_224 | 5 | 7 | 0.000000098858 |
| Brassica carinata | ChrB03 | 4 | CH_bca_576 | 4 | 7 | 0.0000758126 |
| Brassica oleracea | C1 | 4 | CH_bol_84 | 5 | 6 | 0.0000000089739 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 4 | CH_cqu_174 | 5 | 8 | 0.000000308793 |
| Erythranthe guttata | scaffold_13 | 4 | CH_egut_397 | 3 | 3 | 0.000653439 |
| Eutrema salsugineum | scaffold_20 | 4 | CH_esa_252 | 3 | 3 | 0.000636298 |
| Hydrangea macrophylla | Hma1.2p1_0092F.1 | 4 | CH_hma_225 | 3 | 3 | 0.000245164 |
| Lonicera japonica | GWHAAZE00000004 | 4 | CH_lonja_14 | 18 | 30 | 7.82686e-34 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_345 | 4 | 5 | 0.0000165864 |
| Medicago truncatula | chr1 | 4 | CH_mtr_515 | 4 | 9 | 0.0000607119 |
| Quercus lobata | 1 | 4 | CH_qlo_407 | 5 | 5 | 0.0000000437237 |
| Quercus lobata | 6 | 4 | CH_qlo_466 | 6 | 13 | 0.000000293102 |
| Quercus lobata | 5 | 4 | CH_qlo_737 | 4 | 5 | 0.000054107 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_878 | 4 | 5 | 0.0000167673 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_241 | 4 | 4 | 0.00000268219 |
| Schrenkiella parvula | ch1-1 | 4 | CH_spa_216 | 3 | 3 | 0.000793384 |
| Schrenkiella parvula | ch7-4 | 4 | CH_spa_65 | 4 | 4 | 0.00000243638 |
| Utricularia gibba | unitig_21 | 4 | CH_ugi_43 | 4 | 5 | 0.00000350915 |
| Vitis vinifera | chr10 | 4 | CH_vvi_424 | 3 | 3 | 0.000768585 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006829 | zinc ion transport | 4 |
| GO:0006851 | mitochondrial calcium ion transmembrane transport | 16 |
| GO:0015691 | cadmium ion transport | 2 |
| GO:0015693 | magnesium ion transport | 2 |
| GO:0051928 | positive regulation of calcium ion transport | 10 |
| GO:0070509 | calcium ion import | 4 |
| GO:0070574 | cadmium ion transmembrane transport | 4 |
| GO:0071577 | zinc ion transmembrane transport | 48 |
| GO:0071578 | zinc ion import across plasma membrane | 2 |
| GO:1903830 | magnesium ion transmembrane transport | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |