Functional clusters

Information

  • Type Gene Ontology
  • Description nitrogen compound transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Coffea canephora chr6 3 CH_ccan_184 5 38 0.0000203676
Lonicera japonica GWHAAZE00000002 3 CH_lonja_526 4 4 0.000433696
Physcomitrium patens Chr11 3 CH_ppa_108 8 20 0.0000909695
Salvia bowleyana GWHASIU00000008 3 CH_sbo_387 4 4 0.000162013
Coffea canephora chr6 4 CH_ccan_184 5 38 0.0000203676
Lonicera japonica GWHAAZE00000002 4 CH_lonja_526 4 4 0.000433696
Physcomitrium patens Chr11 4 CH_ppa_108 8 20 0.0000909695
Salvia bowleyana GWHASIU00000008 4 CH_sbo_387 4 4 0.000162013

Available child term results

Ontology identifier Description Number of clusters
GO:0003333 amino acid transmembrane transport 4
GO:0006405 RNA export from nucleus 16
GO:0006406 mRNA export from nucleus 4
GO:0006408 snRNA export from nucleus 8
GO:0006409 tRNA export from nucleus 2
GO:0006605 protein targeting 10
GO:0006606 protein import into nucleus 54
GO:0006611 protein export from nucleus 16
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 14
GO:0006623 protein targeting to vacuole 12
GO:0006625 protein targeting to peroxisome 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006857 oligopeptide transport 14
GO:0006862 nucleotide transport 8
GO:0006863 purine nucleobase transport 4
GO:0006865 amino acid transport 22
GO:0006886 intracellular protein transport 6
GO:0009306 protein secretion 2
GO:0010585 glutamine secretion 26
GO:0015031 protein transport 12
GO:0015696 ammonium transport 22
GO:0015706 nitrate transport 8
GO:0015707 nitrite transport 76
GO:0015783 GDP-fucose transmembrane transport 2
GO:0015786 UDP-glucose transmembrane transport 2
GO:0015801 aromatic amino acid transport 8
GO:0015802 basic amino acid transport 8
GO:0015809 arginine transport 14
GO:0015813 L-glutamate transmembrane transport 6
GO:0015822 ornithine transport 16
GO:0015824 proline transport 32
GO:0015827 tryptophan transport 2
GO:0015839 cadaverine transport 20
GO:0015840 urea transport 4
GO:0015843 methylammonium transport 34
GO:0015853 adenine transport 2
GO:0015857 uracil transport 4
GO:0015858 nucleoside transport 4
GO:0015860 purine nucleoside transmembrane transport 2
GO:0015864 pyrimidine nucleoside transport 82
GO:0015865 purine nucleotide transport 8
GO:0015884 folic acid transport 16
GO:0015886 heme transport 12
GO:0016031 tRNA import into mitochondrion 4
GO:0016560 protein import into peroxisome matrix, docking 12
GO:0016973 poly(A)+ mRNA export from nucleus 8
GO:0017038 protein import 10
GO:0030150 protein import into mitochondrial matrix 6
GO:0030581 symbiont intracellular protein transport in host 14
GO:0034635 glutathione transport 10
GO:0034775 glutathione transmembrane transport 18
GO:0035344 hypoxanthine transport 2
GO:0035442 dipeptide transmembrane transport 2
GO:0035672 oligopeptide transmembrane transport 26
GO:0042306 regulation of protein import into nucleus 10
GO:0042886 amide transport 2
GO:0042906 xanthine transport 48
GO:0042938 dipeptide transport 20
GO:0042939 tripeptide transport 8
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0045036 protein targeting to chloroplast 2
GO:0045040 protein insertion into mitochondrial outer membrane 14
GO:0051503 adenine nucleotide transport 2
GO:0051958 methotrexate transport 2
GO:0061015 snRNA import into nucleus 8
GO:0065002 intracellular protein transmembrane transport 2
GO:0071211 protein targeting to vacuole involved in autophagy 8
GO:0071528 tRNA re-export from nucleus 10
GO:0071918 urea transmembrane transport 16
GO:0072488 ammonium transmembrane transport 8
GO:0072530 purine-containing compound transmembrane transport 2
GO:0080143 regulation of amino acid export 64
GO:0090316 positive regulation of intracellular protein transport 2
GO:0090408 phloem nitrate loading 4
GO:0090449 phloem glucosinolate loading 2
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport 2
GO:0097638 L-arginine import across plasma membrane 10
GO:0098712 L-glutamate import across plasma membrane 8
GO:0140021 mitochondrial ADP transmembrane transport 18
GO:1901642 nucleoside transmembrane transport 44
GO:1903400 L-arginine transmembrane transport 16
GO:1903401 L-lysine transmembrane transport 4
GO:1904823 purine nucleobase transmembrane transport 6
GO:1990428 miRNA transport 2
GO:1990569 UDP-N-acetylglucosamine transmembrane transport 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001