Functional clusters

Information

  • Type Gene Ontology
  • Description vesicle-mediated transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Coffea canephora chr2 3 CH_ccan_189 5 42 0.0000250571
Carica papaya supercontig_21 3 CH_cpa_253 4 4 0.000502249
Manihot esculenta Chromosome10 3 CH_mes_285 7 18 0.0000679599
Quercus lobata 8 3 CH_qlo_677 8 29 0.0000287341
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_525 6 15 0.0000526038
Sequoiadendron giganteum chr7 3 CH_sgi_1371 7 33 0.00092087
Sapria himalayana scaffold94_1542895 3 CH_shi_212 4 5 0.000255461
Trifolium pratense Tp57577_TGAC_v2_scaf_423 3 CH_tpr_307 5 8 0.000340584
Coffea canephora chr2 4 CH_ccan_189 5 42 0.0000250571
Carica papaya supercontig_21 4 CH_cpa_253 4 4 0.000502249
Manihot esculenta Chromosome10 4 CH_mes_285 7 18 0.0000679599
Quercus lobata 8 4 CH_qlo_677 8 29 0.0000287341
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_525 6 15 0.0000526038
Sequoiadendron giganteum chr7 4 CH_sgi_1371 7 33 0.00092087
Sapria himalayana scaffold94_1542895 4 CH_shi_212 4 5 0.000255461
Trifolium pratense Tp57577_TGAC_v2_scaf_423 4 CH_tpr_307 5 8 0.000340584

Available child term results

Ontology identifier Description Number of clusters
GO:0000301 retrograde transport, vesicle recycling within Golgi 2
GO:0006887 exocytosis 16
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 6
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 2
GO:0006891 intra-Golgi vesicle-mediated transport 10
GO:0006892 post-Golgi vesicle-mediated transport 4
GO:0006893 Golgi to plasma membrane transport 12
GO:0006895 Golgi to endosome transport 2
GO:0006897 endocytosis 2
GO:0006904 vesicle docking involved in exocytosis 4
GO:0008333 endosome to lysosome transport 2
GO:0016197 endosomal transport 4
GO:0032456 endocytic recycling 18
GO:0035494 SNARE complex disassembly 32
GO:0035652 clathrin-coated vesicle cargo loading 4
GO:0042147 retrograde transport, endosome to Golgi 4
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0045056 transcytosis 2
GO:0045324 late endosome to vacuole transport 2
GO:0048193 Golgi vesicle transport 2
GO:0048208 COPII vesicle coating 56
GO:0048227 plasma membrane to endosome transport 6
GO:0048280 vesicle fusion with Golgi apparatus 8
GO:0051469 vesicle fusion with vacuole 2
GO:0060628 regulation of ER to Golgi vesicle-mediated transport 8
GO:0060858 vesicle-mediated transport involved in floral organ abscission 2
GO:0070676 intralumenal vesicle formation 2
GO:0072583 clathrin-dependent endocytosis 2
GO:0090114 COPII-coated vesicle budding 2
GO:0090522 vesicle tethering involved in exocytosis 26
GO:0099022 vesicle tethering 4
GO:0140029 exocytic process 2
GO:1900186 negative regulation of clathrin-dependent endocytosis 8
GO:2000369 regulation of clathrin-dependent endocytosis 2
GO:2000641 regulation of early endosome to late endosome transport 30

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001