Functional clusters

Information

  • Type Gene Ontology
  • Description ion transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr9 3 CH_camsi_388 8 16 0.00000469582
Citrus clementina scaffold_3 3 CH_ccl_417 6 11 0.000818723
Carya illinoinensis Chr11 3 CH_cil_377 5 5 0.000131215
Cucumis sativus L. chr1 3 CH_csa_170 5 5 0.0000512076
Fragaria vesca Fvb4 3 CH_fve_373 6 13 0.000674638
Magnolia biondii Chr07 3 CH_mbi_675 4 4 0.000920311
Medicago truncatula chr5 3 CH_mtr_471 6 10 0.0000400082
Medicago truncatula chr6 3 CH_mtr_472 6 10 0.0000400082
Solanum lycopersicum SL4.0ch03 3 CH_sly_278 10 24 0.00000929299
Solanum tuberosum ST4.03ch03 3 CH_stu_214 10 21 0.00000027046
Tripterygium wilfordii NC_052254.1 3 CH_twi_293 5 6 0.000399501
Camellia sinensis var. sinensis Chr9 4 CH_camsi_388 8 16 0.00000469582
Citrus clementina scaffold_3 4 CH_ccl_417 6 11 0.000818723
Carya illinoinensis Chr11 4 CH_cil_377 5 5 0.000131215
Cucumis sativus L. chr1 4 CH_csa_170 5 5 0.0000512076
Fragaria vesca Fvb4 4 CH_fve_373 6 13 0.000674638
Magnolia biondii Chr07 4 CH_mbi_675 4 4 0.000920311
Medicago truncatula chr5 4 CH_mtr_471 6 10 0.0000400082
Medicago truncatula chr6 4 CH_mtr_472 6 10 0.0000400082
Solanum lycopersicum SL4.0ch03 4 CH_sly_278 10 24 0.00000929299
Solanum tuberosum ST4.03ch03 4 CH_stu_214 10 21 0.00000027046
Tripterygium wilfordii NC_052254.1 4 CH_twi_293 5 6 0.000399501

Available child term results

Ontology identifier Description Number of clusters
GO:0006812 cation transport 8
GO:0006813 potassium ion transport 2
GO:0006814 sodium ion transport 10
GO:0006817 phosphate ion transport 100
GO:0006824 cobalt ion transport 2
GO:0006825 copper ion transport 30
GO:0006826 iron ion transport 2
GO:0006829 zinc ion transport 4
GO:0006835 dicarboxylic acid transport 2
GO:0006848 pyruvate transport 8
GO:0006849 plasma membrane pyruvate transport 4
GO:0006850 mitochondrial pyruvate transmembrane transport 24
GO:0006851 mitochondrial calcium ion transmembrane transport 16
GO:0010155 regulation of proton transport 26
GO:0010351 lithium ion transport 2
GO:0010359 regulation of anion channel activity 22
GO:0010585 glutamine secretion 26
GO:0015675 nickel cation transport 20
GO:0015689 molybdate ion transport 18
GO:0015690 aluminum cation transport 36
GO:0015691 cadmium ion transport 2
GO:0015692 lead ion transport 4
GO:0015693 magnesium ion transport 2
GO:0015696 ammonium transport 22
GO:0015703 chromate transport 2
GO:0015706 nitrate transport 8
GO:0015707 nitrite transport 76
GO:0015711 organic anion transport 2
GO:0015727 lactate transport 4
GO:0015739 sialic acid transport 2
GO:0015743 malate transport 116
GO:0015786 UDP-glucose transmembrane transport 2
GO:0015809 arginine transport 14
GO:0015813 L-glutamate transmembrane transport 6
GO:0015822 ornithine transport 16
GO:0015824 proline transport 32
GO:0015827 tryptophan transport 2
GO:0015839 cadaverine transport 20
GO:0015843 methylammonium transport 34
GO:0015884 folic acid transport 16
GO:0015886 heme transport 12
GO:0015986 ATP synthesis coupled proton transport 22
GO:0015990 electron transport coupled proton transport 2
GO:0030001 metal ion transport 48
GO:0033214 siderophore-dependent iron import into cell 26
GO:0034220 ion transmembrane transport 8
GO:0034635 glutathione transport 10
GO:0034755 iron ion transmembrane transport 2
GO:0034756 regulation of iron ion transport 14
GO:0034758 positive regulation of iron ion transport 8
GO:0034775 glutathione transmembrane transport 18
GO:0035434 copper ion transmembrane transport 28
GO:0035435 phosphate ion transmembrane transport 8
GO:0043266 regulation of potassium ion transport 4
GO:0044070 regulation of anion transport 8
GO:0046713 borate transport 2
GO:0048250 iron import into the mitochondrion 2
GO:0050482 arachidonic acid secretion 22
GO:0051928 positive regulation of calcium ion transport 10
GO:0051958 methotrexate transport 2
GO:0070509 calcium ion import 4
GO:0070574 cadmium ion transmembrane transport 4
GO:0071421 manganese ion transmembrane transport 6
GO:0071423 malate transmembrane transport 2
GO:0071577 zinc ion transmembrane transport 48
GO:0071578 zinc ion import across plasma membrane 2
GO:0071805 potassium ion transmembrane transport 36
GO:0072488 ammonium transmembrane transport 8
GO:0080160 selenate transport 6
GO:0080168 abscisic acid transport 2
GO:0090408 phloem nitrate loading 4
GO:0090414 molybdate ion export from vacuole 10
GO:0090449 phloem glucosinolate loading 2
GO:0097638 L-arginine import across plasma membrane 10
GO:0098655 cation transmembrane transport 2
GO:0098661 inorganic anion transmembrane transport 2
GO:0098662 inorganic cation transmembrane transport 4
GO:0098705 copper ion import across plasma membrane 46
GO:0098711 iron ion import across plasma membrane 8
GO:0098712 L-glutamate import across plasma membrane 8
GO:0099587 inorganic ion import across plasma membrane 2
GO:0140021 mitochondrial ADP transmembrane transport 18
GO:1901017 negative regulation of potassium ion transmembrane transporter activity 10
GO:1901529 positive regulation of anion channel activity 8
GO:1901684 arsenate ion transmembrane transport 8
GO:1902358 sulfate transmembrane transport 60
GO:1902476 chloride transmembrane transport 10
GO:1902600 proton transmembrane transport 4
GO:1903400 L-arginine transmembrane transport 16
GO:1903401 L-lysine transmembrane transport 4
GO:1903424 fluoride transmembrane transport 18
GO:1903830 magnesium ion transmembrane transport 4
GO:1905011 transmembrane phosphate ion transport from cytosol to vacuole 2
GO:1990547 mitochondrial phosphate ion transmembrane transport 26
GO:1990569 UDP-N-acetylglucosamine transmembrane transport 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001