Functional clusters

Information

  • Type Gene Ontology
  • Description cellular localization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr12 3 CH_camsi_741 11 56 0.000453116
Gossypium hirsutum A01 3 CH_ghi_289 13 49 0.00000171502
Lonicera japonica GWHAAZE00000001 3 CH_lonja_465 13 79 0.000198533
Camellia sinensis var. sinensis Chr12 4 CH_camsi_741 11 56 0.000453116
Gossypium hirsutum A01 4 CH_ghi_289 13 49 0.00000171502
Lonicera japonica GWHAAZE00000001 4 CH_lonja_465 13 79 0.000198533

Available child term results

Ontology identifier Description Number of clusters
GO:0000055 ribosomal large subunit export from nucleus 38
GO:0000056 ribosomal small subunit export from nucleus 22
GO:0000132 establishment of mitotic spindle orientation 2
GO:0006405 RNA export from nucleus 16
GO:0006406 mRNA export from nucleus 4
GO:0006408 snRNA export from nucleus 8
GO:0006409 tRNA export from nucleus 2
GO:0006605 protein targeting 10
GO:0006606 protein import into nucleus 54
GO:0006611 protein export from nucleus 16
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 14
GO:0006621 protein retention in ER lumen 22
GO:0006623 protein targeting to vacuole 12
GO:0006625 protein targeting to peroxisome 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006880 intracellular sequestering of iron ion 60
GO:0006886 intracellular protein transport 6
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 6
GO:0006893 Golgi to plasma membrane transport 12
GO:0006895 Golgi to endosome transport 2
GO:0006904 vesicle docking involved in exocytosis 4
GO:0006913 nucleocytoplasmic transport 10
GO:0008333 endosome to lysosome transport 2
GO:0009904 chloroplast accumulation movement 2
GO:0010381 peroxisome-chloroplast membrane tethering 4
GO:0015919 peroxisomal membrane transport 18
GO:0016197 endosomal transport 4
GO:0016560 protein import into peroxisome matrix, docking 12
GO:0016973 poly(A)+ mRNA export from nucleus 8
GO:0019750 chloroplast localization 2
GO:0030150 protein import into mitochondrial matrix 6
GO:0032119 sequestering of zinc ion 2
GO:0032366 intracellular sterol transport 10
GO:0032367 intracellular cholesterol transport 28
GO:0032456 endocytic recycling 18
GO:0033214 siderophore-dependent iron import into cell 26
GO:0034394 protein localization to cell surface 2
GO:0034504 protein localization to nucleus 2
GO:0035721 intraciliary retrograde transport 2
GO:0042147 retrograde transport, endosome to Golgi 4
GO:0042306 regulation of protein import into nucleus 10
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0045036 protein targeting to chloroplast 2
GO:0045040 protein insertion into mitochondrial outer membrane 14
GO:0045048 protein insertion into ER membrane 4
GO:0045053 protein retention in Golgi apparatus 2
GO:0045324 late endosome to vacuole transport 2
GO:0046907 intracellular transport 2
GO:0048208 COPII vesicle coating 56
GO:0048312 intracellular distribution of mitochondria 4
GO:0051168 nuclear export 14
GO:0051169 nuclear transport 6
GO:0051205 protein insertion into membrane 2
GO:0051208 sequestering of calcium ion 14
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 4
GO:0051457 maintenance of protein location in nucleus 2
GO:0051640 organelle localization 2
GO:0051647 nucleus localization 2
GO:0051649 establishment of localization in cell 2
GO:0051650 establishment of vesicle localization 2
GO:0051651 maintenance of location in cell 2
GO:0051656 establishment of organelle localization 2
GO:0051665 membrane raft localization 2
GO:0051668 localization within membrane 2
GO:0052543 callose deposition in cell wall 4
GO:0060628 regulation of ER to Golgi vesicle-mediated transport 8
GO:0061015 snRNA import into nucleus 8
GO:0061780 mitotic cohesin loading 18
GO:0065002 intracellular protein transmembrane transport 2
GO:0070972 protein localization to endoplasmic reticulum 2
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071166 ribonucleoprotein complex localization 4
GO:0071211 protein targeting to vacuole involved in autophagy 8
GO:0071528 tRNA re-export from nucleus 10
GO:0071562 nucleus-vacuole junction assembly 2
GO:0072594 establishment of protein localization to organelle 4
GO:0072598 protein localization to chloroplast 2
GO:0072660 maintenance of protein location in plasma membrane 2
GO:0080162 intracellular auxin transport 92
GO:0090114 COPII-coated vesicle budding 2
GO:0090316 positive regulation of intracellular protein transport 2
GO:0090435 protein localization to nuclear envelope 8
GO:0090522 vesicle tethering involved in exocytosis 26
GO:0097577 sequestering of iron ion 2
GO:0098711 iron ion import across plasma membrane 8
GO:0099022 vesicle tethering 4
GO:1990052 ER to chloroplast lipid transport 14
GO:2000008 regulation of protein localization to cell surface 32
GO:2000641 regulation of early endosome to late endosome transport 30

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001