Functional clusters
Information
- Type Gene Ontology
- Description pyrimidine nucleoside transport
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 3 | CH_acertr_114 | 3 | 3 | 0.00000002982 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 3 | CH_arhy_693 | 2 | 2 | 0.000838273 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 3 | CH_arhy_694 | 2 | 2 | 0.000838273 |
| Amborella trichopoda | AmTr_v1.0_scaffold00072 | 3 | CH_atr_193 | 2 | 2 | 0.0000794407 |
| Brassica carinata | ChrB01 | 3 | CH_bca_30 | 5 | 8 | 0.00000000000000491085 |
| Brassica carinata | ChrC04 | 3 | CH_bca_873 | 2 | 2 | 0.00059854 |
| Brassica napus | C09 | 3 | CH_bna_66 | 4 | 4 | 0.00000000000402905 |
| Brassica napus | A09 | 3 | CH_bna_98 | 4 | 8 | 0.000000000281973 |
| Brassica oleracea | C9 | 3 | CH_bol_92 | 3 | 4 | 0.0000000256409 |
| Brassica rapa | A09 | 3 | CH_bra_25 | 4 | 4 | 0.00000000000118698 |
| Camellia sinensis var. sinensis | Chr8 | 3 | CH_camsi_237 | 3 | 3 | 0.0000000630811 |
| Cicer arietinum L. | Ca_LG1_v3 | 3 | CH_car_147 | 2 | 2 | 0.00023349 |
| Coffea canephora | chr2 | 3 | CH_ccan_95 | 3 | 37 | 0.000000211387 |
| Citrus clementina | scaffold_2 | 3 | CH_ccl_320 | 2 | 2 | 0.0000820311 |
| Daucus carota | DCARv2_Chr1 | 3 | CH_dca_377 | 2 | 2 | 0.000637775 |
| Daucus carota | DCARv2_Chr2 | 3 | CH_dca_378 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr04 | 3 | CH_egr_243 | 4 | 5 | 0.00000000000300743 |
| Eutrema salsugineum | scaffold_3 | 3 | CH_esa_54 | 3 | 3 | 0.00000000869853 |
| Fragaria x ananassa | Fvb3-3 | 3 | CH_fan_439 | 2 | 2 | 0.000277554 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_330 | 2 | 2 | 0.000353461 |
| Gossypium hirsutum | D06 | 3 | CH_ghi_482 | 2 | 2 | 0.000160209 |
| Glycine max | Gm15 | 3 | CH_gma_280 | 2 | 2 | 0.0000379557 |
| Gossypium raimondii | Chr10 | 3 | CH_gra_247 | 2 | 2 | 0.000160832 |
| Lotus japonicus | chr3 | 3 | CH_lja_353 | 2 | 2 | 0.000715077 |
| Lotus japonicus | chr6 | 3 | CH_lja_95 | 3 | 3 | 0.0000000767031 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_184 | 2 | 2 | 0.0000481684 |
| Oryza sativa ssp. japonica | chr07 | 3 | CH_osa_99 | 3 | 3 | 0.00000000418381 |
| Pisum sativum | chr1LG6 | 3 | CH_psa_268 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NC_039363.1 | 3 | CH_pso_651 | 2 | 2 | 0.000630822 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_652 | 2 | 2 | 0.000630822 |
| Phaseolus vulgaris | Chr06 | 3 | CH_pvu_102 | 3 | 4 | 0.0000000323894 |
| Quercus lobata | 5 | 3 | CH_qlo_117 | 5 | 5 | 5.32966e-17 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_195 | 3 | 5 | 0.000000516688 |
| Schrenkiella parvula | ch6-1 | 3 | CH_spa_32 | 3 | 3 | 0.00000000929892 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_459 | 2 | 3 | 0.000800581 |
| Selenicereus undatus | Scaffold_33680 | 3 | CH_sun_132 | 2 | 3 | 0.000217984 |
| Trochodendron aralioides | group3 | 3 | CH_tar_333 | 2 | 2 | 0.00018011 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 3 | CH_tpr_84 | 3 | 3 | 0.0000000859546 |
| Vigna mungo | CM024075.1 | 3 | CH_vmu_167 | 2 | 2 | 0.0000646141 |
| Vanilla planifolia | CM028154.1 | 3 | CH_vpl_103 | 3 | 4 | 0.00000114635 |
| Zea mays | 7 | 3 | CH_zma_185 | 2 | 2 | 0.0000511313 |
| Acer truncatum | chr10 | 4 | CH_acertr_114 | 3 | 3 | 0.00000002982 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 4 | CH_arhy_693 | 2 | 2 | 0.000838273 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 4 | CH_arhy_694 | 2 | 2 | 0.000838273 |
| Amborella trichopoda | AmTr_v1.0_scaffold00072 | 4 | CH_atr_193 | 2 | 2 | 0.0000794407 |
| Brassica carinata | ChrB01 | 4 | CH_bca_30 | 5 | 8 | 0.00000000000000491085 |
| Brassica carinata | ChrC04 | 4 | CH_bca_873 | 2 | 2 | 0.00059854 |
| Brassica napus | C09 | 4 | CH_bna_66 | 4 | 4 | 0.00000000000402905 |
| Brassica napus | A09 | 4 | CH_bna_98 | 4 | 8 | 0.000000000281973 |
| Brassica oleracea | C9 | 4 | CH_bol_92 | 3 | 4 | 0.0000000256409 |
| Brassica rapa | A09 | 4 | CH_bra_25 | 4 | 4 | 0.00000000000118698 |
| Camellia sinensis var. sinensis | Chr8 | 4 | CH_camsi_237 | 3 | 3 | 0.0000000630811 |
| Cicer arietinum L. | Ca_LG1_v3 | 4 | CH_car_147 | 2 | 2 | 0.00023349 |
| Coffea canephora | chr2 | 4 | CH_ccan_95 | 3 | 37 | 0.000000211387 |
| Citrus clementina | scaffold_2 | 4 | CH_ccl_320 | 2 | 2 | 0.0000820311 |
| Daucus carota | DCARv2_Chr1 | 4 | CH_dca_377 | 2 | 2 | 0.000637775 |
| Daucus carota | DCARv2_Chr2 | 4 | CH_dca_378 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr04 | 4 | CH_egr_243 | 4 | 5 | 0.00000000000300743 |
| Eutrema salsugineum | scaffold_3 | 4 | CH_esa_54 | 3 | 3 | 0.00000000869853 |
| Fragaria x ananassa | Fvb3-3 | 4 | CH_fan_439 | 2 | 2 | 0.000277554 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_330 | 2 | 2 | 0.000353461 |
| Gossypium hirsutum | D06 | 4 | CH_ghi_482 | 2 | 2 | 0.000160209 |
| Glycine max | Gm15 | 4 | CH_gma_280 | 2 | 2 | 0.0000379557 |
| Gossypium raimondii | Chr10 | 4 | CH_gra_247 | 2 | 2 | 0.000160832 |
| Lotus japonicus | chr3 | 4 | CH_lja_353 | 2 | 2 | 0.000715077 |
| Lotus japonicus | chr6 | 4 | CH_lja_95 | 3 | 3 | 0.0000000767031 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_184 | 2 | 2 | 0.0000481684 |
| Oryza sativa ssp. japonica | chr07 | 4 | CH_osa_99 | 3 | 3 | 0.00000000418381 |
| Pisum sativum | chr1LG6 | 4 | CH_psa_268 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NC_039363.1 | 4 | CH_pso_651 | 2 | 2 | 0.000630822 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_652 | 2 | 2 | 0.000630822 |
| Phaseolus vulgaris | Chr06 | 4 | CH_pvu_102 | 3 | 4 | 0.0000000323894 |
| Quercus lobata | 5 | 4 | CH_qlo_117 | 5 | 5 | 5.32966e-17 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_195 | 3 | 5 | 0.000000516688 |
| Schrenkiella parvula | ch6-1 | 4 | CH_spa_32 | 3 | 3 | 0.00000000929892 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_459 | 2 | 3 | 0.000800581 |
| Selenicereus undatus | Scaffold_33680 | 4 | CH_sun_132 | 2 | 3 | 0.000217984 |
| Trochodendron aralioides | group3 | 4 | CH_tar_333 | 2 | 2 | 0.00018011 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 4 | CH_tpr_84 | 3 | 3 | 0.0000000859546 |
| Vigna mungo | CM024075.1 | 4 | CH_vmu_167 | 2 | 2 | 0.0000646141 |
| Vanilla planifolia | CM028154.1 | 4 | CH_vpl_103 | 3 | 4 | 0.00000114635 |
| Zea mays | 7 | 4 | CH_zma_185 | 2 | 2 | 0.0000511313 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |