Functional clusters

Information

  • Type Gene Ontology
  • Description macromolecule localization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr11 3 CH_camsi_660 13 76 0.000261605
Gossypium hirsutum A09 3 CH_ghi_484 12 53 0.000166562
Helianthus annuus HanXRQChr13 3 CH_han_702 5 6 0.000755453
Camellia sinensis var. sinensis Chr11 4 CH_camsi_660 13 76 0.000261605
Gossypium hirsutum A09 4 CH_ghi_484 12 53 0.000166562
Helianthus annuus HanXRQChr13 4 CH_han_702 5 6 0.000755453

Available child term results

Ontology identifier Description Number of clusters
GO:0006405 RNA export from nucleus 16
GO:0006406 mRNA export from nucleus 4
GO:0006408 snRNA export from nucleus 8
GO:0006409 tRNA export from nucleus 2
GO:0006605 protein targeting 10
GO:0006606 protein import into nucleus 54
GO:0006611 protein export from nucleus 16
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 14
GO:0006621 protein retention in ER lumen 22
GO:0006623 protein targeting to vacuole 12
GO:0006625 protein targeting to peroxisome 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006869 lipid transport 320
GO:0006886 intracellular protein transport 6
GO:0009306 protein secretion 2
GO:0015031 protein transport 12
GO:0015774 polysaccharide transport 8
GO:0015908 fatty acid transport 2
GO:0016031 tRNA import into mitochondrion 4
GO:0016560 protein import into peroxisome matrix, docking 12
GO:0016973 poly(A)+ mRNA export from nucleus 8
GO:0017038 protein import 10
GO:0017121 plasma membrane phospholipid scrambling 10
GO:0019915 lipid storage 2
GO:0030150 protein import into mitochondrial matrix 6
GO:0030581 symbiont intracellular protein transport in host 14
GO:0032366 intracellular sterol transport 10
GO:0032367 intracellular cholesterol transport 28
GO:0034197 triglyceride transport 2
GO:0034203 glycolipid translocation 2
GO:0034394 protein localization to cell surface 2
GO:0034504 protein localization to nucleus 2
GO:0042306 regulation of protein import into nucleus 10
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0045036 protein targeting to chloroplast 2
GO:0045040 protein insertion into mitochondrial outer membrane 14
GO:0045048 protein insertion into ER membrane 4
GO:0045053 protein retention in Golgi apparatus 2
GO:0045176 apical protein localization 2
GO:0045184 establishment of protein localization 2
GO:0045185 maintenance of protein location 2
GO:0046865 terpenoid transport 34
GO:0050482 arachidonic acid secretion 22
GO:0051205 protein insertion into membrane 2
GO:0051457 maintenance of protein location in nucleus 2
GO:0052542 defense response by callose deposition 6
GO:0052543 callose deposition in cell wall 4
GO:0052545 callose localization 2
GO:0052576 carbohydrate storage 10
GO:0061015 snRNA import into nucleus 8
GO:0061780 mitotic cohesin loading 18
GO:0065002 intracellular protein transmembrane transport 2
GO:0070972 protein localization to endoplasmic reticulum 2
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071211 protein targeting to vacuole involved in autophagy 8
GO:0071528 tRNA re-export from nucleus 10
GO:0072594 establishment of protein localization to organelle 4
GO:0072598 protein localization to chloroplast 2
GO:0072660 maintenance of protein location in plasma membrane 2
GO:0080165 callose deposition in phloem sieve plate 4
GO:0080168 abscisic acid transport 2
GO:0090316 positive regulation of intracellular protein transport 2
GO:0090435 protein localization to nuclear envelope 8
GO:0120009 intermembrane lipid transfer 20
GO:0140042 lipid droplet formation 2
GO:1901703 protein localization involved in auxin polar transport 6
GO:1902001 fatty acid transmembrane transport 4
GO:1905200 gibberellic acid transmembrane transport 10
GO:1905885 positive regulation of triglyceride transport 4
GO:1990052 ER to chloroplast lipid transport 14
GO:1990428 miRNA transport 2
GO:2000008 regulation of protein localization to cell surface 32
GO:2000071 regulation of defense response by callose deposition 14

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001