Functional clusters

Information

  • Type Gene Ontology
  • Description protein transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB03 3 CH_bca_661 4 4 0.000176384
Cannabis sativa NC_044371.1 3 CH_cansat_154 5 7 0.00000523516
Malus domestica Chr03 3 CH_mdo_238 6 9 0.000000321166
Sequoiadendron giganteum chr3 3 CH_sgi_721 5 6 0.00000108366
Trochodendron aralioides group5 3 CH_tar_228 5 6 0.0000154743
Zea mays 9 3 CH_zma_213 5 5 0.0000973989
Brassica carinata ChrB03 4 CH_bca_661 4 4 0.000176384
Cannabis sativa NC_044371.1 4 CH_cansat_154 5 7 0.00000523516
Malus domestica Chr03 4 CH_mdo_238 6 9 0.000000321166
Sequoiadendron giganteum chr3 4 CH_sgi_721 5 6 0.00000108366
Trochodendron aralioides group5 4 CH_tar_228 5 6 0.0000154743
Zea mays 9 4 CH_zma_213 5 5 0.0000973989

Available child term results

Ontology identifier Description Number of clusters
GO:0006605 protein targeting 10
GO:0006606 protein import into nucleus 54
GO:0006611 protein export from nucleus 16
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 14
GO:0006623 protein targeting to vacuole 12
GO:0006625 protein targeting to peroxisome 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006886 intracellular protein transport 6
GO:0009306 protein secretion 2
GO:0016560 protein import into peroxisome matrix, docking 12
GO:0017038 protein import 10
GO:0030150 protein import into mitochondrial matrix 6
GO:0030581 symbiont intracellular protein transport in host 14
GO:0042306 regulation of protein import into nucleus 10
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0045036 protein targeting to chloroplast 2
GO:0045040 protein insertion into mitochondrial outer membrane 14
GO:0065002 intracellular protein transmembrane transport 2
GO:0071211 protein targeting to vacuole involved in autophagy 8
GO:0090316 positive regulation of intracellular protein transport 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001