Functional clusters
Information
- Type Gene Ontology
- Description carbohydrate transport
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr9 | 3 | CH_camsi_642 | 4 | 18 | 0.000201394 |
| Cicer arietinum L. | Ca_LG7_v3 | 3 | CH_car_126 | 4 | 16 | 0.000104162 |
| Citrus clementina | scaffold_5 | 3 | CH_ccl_188 | 5 | 15 | 0.000000327638 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_369 | 3 | 4 | 0.000263992 |
| Daucus carota | DCARv2_Chr7 | 3 | CH_dca_163 | 4 | 5 | 0.00000231457 |
| Durio zibethinus | NW_019168481.1 | 3 | CH_dzi_137 | 4 | 4 | 0.00000148396 |
| Durio zibethinus | NW_019168381.1 | 3 | CH_dzi_315 | 3 | 3 | 0.000621666 |
| Durio zibethinus | NW_019168004.1 | 3 | CH_dzi_88 | 5 | 6 | 0.0000000210066 |
| Fragaria x ananassa | Fvb6-3 | 3 | CH_fan_362 | 3 | 3 | 0.0000757223 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_363 | 3 | 3 | 0.0000757223 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_14 | 9 | 14 | 8.69435e-20 |
| Fragaria vesca | Fvb2 | 3 | CH_fve_340 | 3 | 5 | 0.00047497 |
| Lupinus albus | Lalb_Chr02 | 3 | CH_lal_115 | 5 | 6 | 0.000000136885 |
| Lotus japonicus | chr1 | 3 | CH_lja_106 | 4 | 4 | 0.000000195676 |
| Malus domestica | Chr11 | 3 | CH_mdo_188 | 4 | 4 | 0.0000000376777 |
| Malus domestica | Chr12 | 3 | CH_mdo_361 | 4 | 12 | 0.0000185438 |
| Oryza sativa ssp. japonica | chr09 | 3 | CH_osa_162 | 6 | 25 | 0.000000476412 |
| Punica granatum | NC_045127.1 | 3 | CH_pgr_359 | 3 | 3 | 0.000547493 |
| Prunus persica | Pp08 | 3 | CH_ppe_290 | 3 | 3 | 0.0000338897 |
| Populus trichocarpa | Chr13 | 3 | CH_ptr_378 | 3 | 4 | 0.000265242 |
| Phaseolus vulgaris | Chr06 | 3 | CH_pvu_379 | 3 | 5 | 0.000798359 |
| Quercus lobata | 3 | 3 | CH_qlo_458 | 4 | 4 | 0.000000230328 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_91 | 7 | 14 | 0.0000000000000166234 |
| Salix brachista | GWHAAZH00000005 | 3 | CH_sbr_223 | 3 | 3 | 0.0000425282 |
| Salix brachista | GWHAAZH00000013 | 3 | CH_sbr_268 | 3 | 4 | 0.000169975 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_461 | 3 | 8 | 0.000822209 |
| Solanum tuberosum | ST4.03ch03 | 3 | CH_stu_118 | 6 | 9 | 0.000000000026947 |
| Solanum tuberosum | ST4.03ch01 | 3 | CH_stu_428 | 3 | 3 | 0.000121548 |
| Solanum tuberosum | ST4.03ch04 | 3 | CH_stu_429 | 3 | 3 | 0.000121548 |
| Trochodendron aralioides | group17 | 3 | CH_tar_363 | 3 | 4 | 0.000182296 |
| Vitis vinifera | chr14 | 3 | CH_vvi_16 | 11 | 14 | 1.10545e-25 |
| Camellia sinensis var. sinensis | Chr9 | 4 | CH_camsi_642 | 4 | 18 | 0.000201394 |
| Cicer arietinum L. | Ca_LG7_v3 | 4 | CH_car_126 | 4 | 16 | 0.000104162 |
| Citrus clementina | scaffold_5 | 4 | CH_ccl_188 | 5 | 15 | 0.000000327638 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_369 | 3 | 4 | 0.000263992 |
| Daucus carota | DCARv2_Chr7 | 4 | CH_dca_163 | 4 | 5 | 0.00000231457 |
| Durio zibethinus | NW_019168481.1 | 4 | CH_dzi_137 | 4 | 4 | 0.00000148396 |
| Durio zibethinus | NW_019168381.1 | 4 | CH_dzi_315 | 3 | 3 | 0.000621666 |
| Durio zibethinus | NW_019168004.1 | 4 | CH_dzi_88 | 5 | 6 | 0.0000000210066 |
| Fragaria x ananassa | Fvb6-3 | 4 | CH_fan_362 | 3 | 3 | 0.0000757223 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_363 | 3 | 3 | 0.0000757223 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_14 | 9 | 14 | 8.69435e-20 |
| Fragaria vesca | Fvb2 | 4 | CH_fve_340 | 3 | 5 | 0.00047497 |
| Lupinus albus | Lalb_Chr02 | 4 | CH_lal_115 | 5 | 6 | 0.000000136885 |
| Lotus japonicus | chr1 | 4 | CH_lja_106 | 4 | 4 | 0.000000195676 |
| Malus domestica | Chr11 | 4 | CH_mdo_188 | 4 | 4 | 0.0000000376777 |
| Malus domestica | Chr12 | 4 | CH_mdo_361 | 4 | 12 | 0.0000185438 |
| Oryza sativa ssp. japonica | chr09 | 4 | CH_osa_162 | 6 | 25 | 0.000000476412 |
| Punica granatum | NC_045127.1 | 4 | CH_pgr_359 | 3 | 3 | 0.000547493 |
| Prunus persica | Pp08 | 4 | CH_ppe_290 | 3 | 3 | 0.0000338897 |
| Populus trichocarpa | Chr13 | 4 | CH_ptr_378 | 3 | 4 | 0.000265242 |
| Phaseolus vulgaris | Chr06 | 4 | CH_pvu_379 | 3 | 5 | 0.000798359 |
| Quercus lobata | 3 | 4 | CH_qlo_458 | 4 | 4 | 0.000000230328 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_91 | 7 | 14 | 0.0000000000000166234 |
| Salix brachista | GWHAAZH00000005 | 4 | CH_sbr_223 | 3 | 3 | 0.0000425282 |
| Salix brachista | GWHAAZH00000013 | 4 | CH_sbr_268 | 3 | 4 | 0.000169975 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_461 | 3 | 8 | 0.000822209 |
| Solanum tuberosum | ST4.03ch03 | 4 | CH_stu_118 | 6 | 9 | 0.000000000026947 |
| Solanum tuberosum | ST4.03ch01 | 4 | CH_stu_428 | 3 | 3 | 0.000121548 |
| Solanum tuberosum | ST4.03ch04 | 4 | CH_stu_429 | 3 | 3 | 0.000121548 |
| Trochodendron aralioides | group17 | 4 | CH_tar_363 | 3 | 4 | 0.000182296 |
| Vitis vinifera | chr14 | 4 | CH_vvi_16 | 11 | 14 | 1.10545e-25 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009401 | phosphoenolpyruvate-dependent sugar phosphotransferase system | 2 |
| GO:0009915 | phloem sucrose loading | 2 |
| GO:0015749 | monosaccharide transmembrane transport | 6 |
| GO:0015757 | galactose transmembrane transport | 14 |
| GO:0015768 | maltose transport | 2 |
| GO:0015770 | sucrose transport | 22 |
| GO:0015774 | polysaccharide transport | 8 |
| GO:0110128 | phloem sucrose unloading | 6 |
| GO:1902334 | fructose export from vacuole to cytoplasm | 2 |
| GO:1904659 | glucose transmembrane transport | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |