Functional clusters
Information
- Type Gene Ontology
- Description intracellular auxin transport
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 3 | CH_acertr_21 | 6 | 6 | 0.00000000000000106334 |
| Aquilegia oxysepala | CHR06 | 3 | CH_aox_31 | 4 | 4 | 0.000000000325011 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 3 | CH_bvu_121 | 3 | 3 | 0.00000294069 |
| Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_102 | 7 | 77 | 0.0000000000111713 |
| Coffea canephora | chr7 | 3 | CH_ccan_30 | 4 | 18 | 0.0000000000664219 |
| Carya illinoinensis | Chr07 | 3 | CH_cil_437 | 3 | 8 | 0.000262846 |
| Carya illinoinensis | Chr14 | 3 | CH_cil_60 | 6 | 6 | 3.82248e-16 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3036 | 3 | CH_cqu_35 | 6 | 6 | 7.2342e-16 |
| Cucumis sativus L. | chr3 | 3 | CH_csa_123 | 3 | 4 | 0.00000146315 |
| Davidia involucrata | GWHABJS00000012 | 3 | CH_din_393 | 3 | 17 | 0.000727514 |
| Durio zibethinus | NW_019168492.1 | 3 | CH_dzi_223 | 3 | 10 | 0.0000849645 |
| Fragaria x ananassa | Fvb5-4 | 3 | CH_fan_374 | 3 | 9 | 0.0000991274 |
| Fragaria vesca | Fvb5 | 3 | CH_fve_163 | 3 | 4 | 0.00000116593 |
| Gossypium hirsutum | A05 | 3 | CH_ghi_306 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D05 | 3 | CH_ghi_307 | 3 | 3 | 0.00000278063 |
| Glycine max | Gm16 | 3 | CH_gma_145 | 4 | 7 | 0.0000000419642 |
| Gossypium raimondii | Chr09 | 3 | CH_gra_151 | 3 | 3 | 0.00000123302 |
| Helianthus annuus | HanXRQChr14 | 3 | CH_han_137 | 6 | 34 | 0.0000000000702912 |
| Helianthus annuus | HanXRQChr10 | 3 | CH_han_413 | 3 | 5 | 0.0000216942 |
| Lupinus albus | Lalb_Chr05 | 3 | CH_lal_71 | 5 | 13 | 0.000000000625985 |
| Lotus japonicus | chr4 | 3 | CH_lja_342 | 3 | 14 | 0.000612369 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 3 | CH_lsa_251 | 3 | 3 | 0.00000384029 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_32 | 8 | 21 | 4.5785e-18 |
| Magnolia biondii | Chr01 | 3 | CH_mbi_217 | 3 | 3 | 0.000000198133 |
| Malus domestica | Chr05 | 3 | CH_mdo_138 | 4 | 6 | 0.00000000446456 |
| Medicago truncatula | chr5 | 3 | CH_mtr_87 | 7 | 37 | 0.000000000000071196 |
| Punica granatum | NC_045132.1 | 3 | CH_pgr_152 | 4 | 17 | 0.000000379194 |
| Prunus persica | Pp05 | 3 | CH_ppe_235 | 3 | 4 | 0.00000186944 |
| Pisum sativum | chr4LG4 | 3 | CH_psa_84 | 5 | 40 | 0.0000000467051 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_290 | 3 | 3 | 0.00000051773 |
| Phaseolus vulgaris | Chr10 | 3 | CH_pvu_176 | 3 | 4 | 0.00000534308 |
| Quercus lobata | 4 | 3 | CH_qlo_499 | 3 | 3 | 0.000000659739 |
| Quercus lobata | 6 | 3 | CH_qlo_853 | 3 | 13 | 0.000188345 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_113 | 6 | 17 | 0.000000000000519301 |
| Salix brachista | GWHAAZH00000011 | 3 | CH_sbr_170 | 3 | 3 | 0.0000021681 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_262 | 5 | 5 | 0.000000000000361959 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_435 | 4 | 4 | 0.00000000106137 |
| Sapria himalayana | scaffold11_13529635 | 3 | CH_shi_29 | 4 | 5 | 0.0000000000981514 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_384 | 3 | 11 | 0.000102169 |
| Selenicereus undatus | Scaffold_33673 | 3 | CH_sun_122 | 3 | 13 | 0.000126633 |
| Selenicereus undatus | Scaffold_19641 | 3 | CH_sun_64 | 3 | 5 | 0.00000443386 |
| Theobroma cacao | Chromosome_10 | 3 | CH_tca_11 | 8 | 8 | 8.66184e-23 |
| Vigna mungo | CM024078.1 | 3 | CH_vmu_17 | 5 | 6 | 0.00000000000100943 |
| Vanilla planifolia | CM028161.1 | 3 | CH_vpl_141 | 3 | 4 | 0.00000720466 |
| Vanilla planifolia | CM028161.1 | 3 | CH_vpl_89 | 4 | 12 | 0.000000295904 |
| Vitis vinifera | chr4 | 3 | CH_vvi_29 | 7 | 7 | 5.23704e-20 |
| Acer truncatum | chr3 | 4 | CH_acertr_21 | 6 | 6 | 0.00000000000000106334 |
| Aquilegia oxysepala | CHR06 | 4 | CH_aox_31 | 4 | 4 | 0.000000000325011 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 4 | CH_bvu_121 | 3 | 3 | 0.00000294069 |
| Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_102 | 7 | 77 | 0.0000000000111713 |
| Coffea canephora | chr7 | 4 | CH_ccan_30 | 4 | 18 | 0.0000000000664219 |
| Carya illinoinensis | Chr07 | 4 | CH_cil_437 | 3 | 8 | 0.000262846 |
| Carya illinoinensis | Chr14 | 4 | CH_cil_60 | 6 | 6 | 3.82248e-16 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3036 | 4 | CH_cqu_35 | 6 | 6 | 7.2342e-16 |
| Cucumis sativus L. | chr3 | 4 | CH_csa_123 | 3 | 4 | 0.00000146315 |
| Davidia involucrata | GWHABJS00000012 | 4 | CH_din_393 | 3 | 17 | 0.000727514 |
| Durio zibethinus | NW_019168492.1 | 4 | CH_dzi_223 | 3 | 10 | 0.0000849645 |
| Fragaria x ananassa | Fvb5-4 | 4 | CH_fan_374 | 3 | 9 | 0.0000991274 |
| Fragaria vesca | Fvb5 | 4 | CH_fve_163 | 3 | 4 | 0.00000116593 |
| Gossypium hirsutum | A05 | 4 | CH_ghi_306 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D05 | 4 | CH_ghi_307 | 3 | 3 | 0.00000278063 |
| Glycine max | Gm16 | 4 | CH_gma_145 | 4 | 7 | 0.0000000419642 |
| Gossypium raimondii | Chr09 | 4 | CH_gra_151 | 3 | 3 | 0.00000123302 |
| Helianthus annuus | HanXRQChr14 | 4 | CH_han_137 | 6 | 34 | 0.0000000000702912 |
| Helianthus annuus | HanXRQChr10 | 4 | CH_han_413 | 3 | 5 | 0.0000216942 |
| Lupinus albus | Lalb_Chr05 | 4 | CH_lal_71 | 5 | 13 | 0.000000000625985 |
| Lotus japonicus | chr4 | 4 | CH_lja_342 | 3 | 14 | 0.000612369 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 4 | CH_lsa_251 | 3 | 3 | 0.00000384029 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_32 | 8 | 21 | 4.5785e-18 |
| Magnolia biondii | Chr01 | 4 | CH_mbi_217 | 3 | 3 | 0.000000198133 |
| Malus domestica | Chr05 | 4 | CH_mdo_138 | 4 | 6 | 0.00000000446456 |
| Medicago truncatula | chr5 | 4 | CH_mtr_87 | 7 | 37 | 0.000000000000071196 |
| Punica granatum | NC_045132.1 | 4 | CH_pgr_152 | 4 | 17 | 0.000000379194 |
| Prunus persica | Pp05 | 4 | CH_ppe_235 | 3 | 4 | 0.00000186944 |
| Pisum sativum | chr4LG4 | 4 | CH_psa_84 | 5 | 40 | 0.0000000467051 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_290 | 3 | 3 | 0.00000051773 |
| Phaseolus vulgaris | Chr10 | 4 | CH_pvu_176 | 3 | 4 | 0.00000534308 |
| Quercus lobata | 4 | 4 | CH_qlo_499 | 3 | 3 | 0.000000659739 |
| Quercus lobata | 6 | 4 | CH_qlo_853 | 3 | 13 | 0.000188345 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_113 | 6 | 17 | 0.000000000000519301 |
| Salix brachista | GWHAAZH00000011 | 4 | CH_sbr_170 | 3 | 3 | 0.0000021681 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_262 | 5 | 5 | 0.000000000000361959 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_435 | 4 | 4 | 0.00000000106137 |
| Sapria himalayana | scaffold11_13529635 | 4 | CH_shi_29 | 4 | 5 | 0.0000000000981514 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_384 | 3 | 11 | 0.000102169 |
| Selenicereus undatus | Scaffold_33673 | 4 | CH_sun_122 | 3 | 13 | 0.000126633 |
| Selenicereus undatus | Scaffold_19641 | 4 | CH_sun_64 | 3 | 5 | 0.00000443386 |
| Theobroma cacao | Chromosome_10 | 4 | CH_tca_11 | 8 | 8 | 8.66184e-23 |
| Vigna mungo | CM024078.1 | 4 | CH_vmu_17 | 5 | 6 | 0.00000000000100943 |
| Vanilla planifolia | CM028161.1 | 4 | CH_vpl_141 | 3 | 4 | 0.00000720466 |
| Vanilla planifolia | CM028161.1 | 4 | CH_vpl_89 | 4 | 12 | 0.000000295904 |
| Vitis vinifera | chr4 | 4 | CH_vvi_29 | 7 | 7 | 5.23704e-20 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |