Functional clusters

Information

  • Type Gene Ontology
  • Description COPII vesicle coating

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 3 CH_aar_214 2 2 0.000273698
Actinidia chinensis Lachesis_group6 3 CH_ach_58 3 3 0.000000531158
Arabidopsis lyrata scaffold_8 3 CH_aly_95 3 6 0.000000130689
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 3 CH_arhy_638 2 4 0.000538863
Arabidopsis thaliana Chr5 3 CH_ath_352 2 2 0.0000286492
Brassica carinata ChrC04 3 CH_bca_918 2 3 0.000641272
Brassica napus A09 3 CH_bna_533 2 2 0.000278425
Brassica oleracea C9 3 CH_bol_280 2 2 0.0000980584
Camellia sinensis var. sinensis Chr6 3 CH_camsi_861 2 2 0.000962949
Capsicum annuum PGAv.1.6.scaffold1227 3 CH_can_412 2 4 0.000495622
Cardamine hirsuta Chr6 3 CH_chi_99 3 3 0.0000000286668
Carica papaya supercontig_29 3 CH_cpa_169 2 2 0.0000950661
Capsella rubella scaffold_8 3 CH_cru_223 2 2 0.0000731154
Glycine max Gm11 3 CH_gma_392 2 2 0.000227734
Glycine max Gm01 3 CH_gma_393 2 2 0.000227734
Gossypium raimondii Chr01 3 CH_gra_300 2 2 0.000321664
Helianthus annuus HanXRQChr16 3 CH_han_593 2 2 0.000231857
Lupinus albus Lalb_Chr09 3 CH_lal_335 2 2 0.000314895
Nicotiana tabacum Nitab4.5_0000712 3 CH_nta_41 3 5 0.000000722306
Physcomitrium patens Chr04 3 CH_ppa_136 2 2 0.000183818
Rosa chinensis RcHm_v2.0_Chr7 3 CH_rch_147 4 6 0.0000000000142548
Sequoiadendron giganteum chr2 3 CH_sgi_1145 2 2 0.000146145
Solanum lycopersicum SL4.0ch08 3 CH_sly_406 2 3 0.000176077
Selaginella moellendorffii scaffold_17 3 CH_smo_13 8 25 0.000000000000089157
Selaginella moellendorffii scaffold_27 3 CH_smo_2 15 40 9.41527e-31
Schrenkiella parvula ch2-4 3 CH_spa_34 3 3 0.00000000929892
Solanum pennellii Spenn-ch08 3 CH_spe_334 2 3 0.000133434
Vanilla planifolia CM028151.1 3 CH_vpl_79 4 39 0.0000000994192
Aethionema arabicum LG-2 4 CH_aar_214 2 2 0.000273698
Actinidia chinensis Lachesis_group6 4 CH_ach_58 3 3 0.000000531158
Arabidopsis lyrata scaffold_8 4 CH_aly_95 3 6 0.000000130689
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 4 CH_arhy_638 2 4 0.000538863
Arabidopsis thaliana Chr5 4 CH_ath_352 2 2 0.0000286492
Brassica carinata ChrC04 4 CH_bca_918 2 3 0.000641272
Brassica napus A09 4 CH_bna_533 2 2 0.000278425
Brassica oleracea C9 4 CH_bol_280 2 2 0.0000980584
Camellia sinensis var. sinensis Chr6 4 CH_camsi_861 2 2 0.000962949
Capsicum annuum PGAv.1.6.scaffold1227 4 CH_can_412 2 4 0.000495622
Cardamine hirsuta Chr6 4 CH_chi_99 3 3 0.0000000286668
Carica papaya supercontig_29 4 CH_cpa_169 2 2 0.0000950661
Capsella rubella scaffold_8 4 CH_cru_223 2 2 0.0000731154
Glycine max Gm11 4 CH_gma_392 2 2 0.000227734
Glycine max Gm01 4 CH_gma_393 2 2 0.000227734
Gossypium raimondii Chr01 4 CH_gra_300 2 2 0.000321664
Helianthus annuus HanXRQChr16 4 CH_han_593 2 2 0.000231857
Lupinus albus Lalb_Chr09 4 CH_lal_335 2 2 0.000314895
Nicotiana tabacum Nitab4.5_0000712 4 CH_nta_41 3 5 0.000000722306
Physcomitrium patens Chr04 4 CH_ppa_136 2 2 0.000183818
Rosa chinensis RcHm_v2.0_Chr7 4 CH_rch_147 4 6 0.0000000000142548
Sequoiadendron giganteum chr2 4 CH_sgi_1145 2 2 0.000146145
Solanum lycopersicum SL4.0ch08 4 CH_sly_406 2 3 0.000176077
Selaginella moellendorffii scaffold_17 4 CH_smo_13 8 25 0.000000000000089157
Selaginella moellendorffii scaffold_27 4 CH_smo_2 15 40 9.41527e-31
Schrenkiella parvula ch2-4 4 CH_spa_34 3 3 0.00000000929892
Solanum pennellii Spenn-ch08 4 CH_spe_334 2 3 0.000133434
Vanilla planifolia CM028151.1 4 CH_vpl_79 4 39 0.0000000994192

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001