Functional clusters
Information
- Type Gene Ontology
- Description vacuolar transport
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Eucalyptus grandis | Chr03 | 3 | CH_egr_623 | 4 | 6 | 0.0000209557 |
| Hydrangea macrophylla | Hma1.2p1_0008F-1.1 | 3 | CH_hma_279 | 3 | 3 | 0.000433646 |
| Magnolia biondii | Chr19 | 3 | CH_mbi_572 | 3 | 3 | 0.000429824 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_430 | 4 | 7 | 0.0000401454 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_639 | 3 | 3 | 0.000612474 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_750 | 3 | 4 | 0.000696745 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_1305 | 3 | 3 | 0.000524862 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_1306 | 3 | 3 | 0.000524862 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_623 | 4 | 6 | 0.0000209557 |
| Hydrangea macrophylla | Hma1.2p1_0008F-1.1 | 4 | CH_hma_279 | 3 | 3 | 0.000433646 |
| Magnolia biondii | Chr19 | 4 | CH_mbi_572 | 3 | 3 | 0.000429824 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_430 | 4 | 7 | 0.0000401454 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_639 | 3 | 3 | 0.000612474 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_750 | 3 | 4 | 0.000696745 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_1305 | 3 | 3 | 0.000524862 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_1306 | 3 | 3 | 0.000524862 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006623 | protein targeting to vacuole | 12 |
| GO:0008333 | endosome to lysosome transport | 2 |
| GO:0043328 | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 14 |
| GO:0045324 | late endosome to vacuole transport | 2 |
| GO:0071211 | protein targeting to vacuole involved in autophagy | 8 |
| GO:0090414 | molybdate ion export from vacuole | 10 |
| GO:1902334 | fructose export from vacuole to cytoplasm | 2 |
| GO:1903415 | flavonoid transport from endoplasmic reticulum to plant-type vacuole | 4 |
| GO:1905011 | transmembrane phosphate ion transport from cytosol to vacuole | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |