Functional clusters

Information

  • Type Gene Ontology
  • Description protein-containing complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C02 3 CH_bna_397 12 23 0.0000275045
Brassica napus C06 3 CH_bna_41 19 26 0.0000000000000145578
Brassica rapa Brapa_scaffold_58 3 CH_bra_67 17 31 0.0000000255466
Beta vulgaris Scaffold_0012 3 CH_bvu_26 18 23 0.0000000000000693042
Cannabis sativa NC_044372.1 3 CH_cansat_284 18 73 0.000206365
Cicer arietinum L. Ca_LG6_v3 3 CH_car_220 10 19 0.000992623
Coffea canephora chr1 3 CH_ccan_106 9 67 0.000000755304
Carya illinoinensis Chr10 3 CH_cil_384 10 16 0.000165666
Davidia involucrata GWHABJS00000010 3 CH_din_378 14 41 0.000508178
Erythranthe guttata scaffold_4 3 CH_egut_110 18 31 0.00000000147139
Gossypium hirsutum A12 3 CH_ghi_542 8 9 0.000277754
Gossypium hirsutum D01 3 CH_ghi_74 22 31 0.0000000000000148336
Glycine max Gm12 3 CH_gma_99 11 11 0.00000000228485
Helianthus annuus HanXRQChr02 3 CH_han_282 12 17 0.000000331209
Helianthus annuus HanXRQChr11 3 CH_han_283 12 17 0.000000331209
Helianthus annuus HanXRQChr02 3 CH_han_408 9 11 0.0000181872
Helianthus annuus HanXRQChr10 3 CH_han_77 17 21 0.000000000000212238
Helianthus annuus HanXRQChr10 3 CH_han_79 18 24 0.000000000000245143
Lotus japonicus Contig00318 3 CH_lja_6 29 32 8.01636e-27
Lonicera japonica GWHAAZE00000002 3 CH_lonja_48 30 52 1.14488e-20
Micromonas commoda Chr_01 3 CH_mco_5 25 80 0.0000436923
Manihot esculenta Chromosome09 3 CH_mes_418 9 14 0.000743218
Medicago truncatula chr8 3 CH_mtr_743 17 77 0.00076578
Nelumbo nucifera scaffold020 3 CH_nnu_273 11 25 0.000326434
Petunia axillaris Peaxi162Scf00299 3 CH_pax_275 9 14 0.000254726
Salvia bowleyana GWHASIU00000002 3 CH_sbo_441 17 78 0.000399244
Sechium edule Contig00297 3 CH_sed_24 25 34 3.86717e-17
Sequoiadendron giganteum chr6 3 CH_sgi_1308 7 9 0.000558599
Solanum pennellii Spenn-ch06 3 CH_spe_289 18 75 0.0000462216
Solanum tuberosum ST4.03ch06 3 CH_stu_312 25 80 0.00000980562
Solanum tuberosum ST4.03ch01 3 CH_stu_566 18 52 0.000506922
Selenicereus undatus Scaffold_33676 3 CH_sun_14 14 14 0.00000000000018722
Selenicereus undatus Scaffold_19641 3 CH_sun_16 13 13 0.00000000000316387
Selenicereus undatus Scaffold_18573 3 CH_sun_27 15 22 0.00000000126694
Selenicereus undatus Scaffold_33673 3 CH_sun_33 11 12 0.0000000102357
Selenicereus undatus Scaffold_2055 3 CH_sun_62 8 8 0.00000432312
Utricularia gibba unitig_747 3 CH_ugi_56 19 58 0.0000570575
Brassica napus C02 4 CH_bna_397 12 23 0.0000275045
Brassica napus C06 4 CH_bna_41 19 26 0.0000000000000145578
Brassica rapa Brapa_scaffold_58 4 CH_bra_67 17 31 0.0000000255466
Beta vulgaris Scaffold_0012 4 CH_bvu_26 18 23 0.0000000000000693042
Cannabis sativa NC_044372.1 4 CH_cansat_284 18 73 0.000206365
Cicer arietinum L. Ca_LG6_v3 4 CH_car_220 10 19 0.000992623
Coffea canephora chr1 4 CH_ccan_106 9 67 0.000000755304
Carya illinoinensis Chr10 4 CH_cil_384 10 16 0.000165666
Davidia involucrata GWHABJS00000010 4 CH_din_378 14 41 0.000508178
Erythranthe guttata scaffold_4 4 CH_egut_110 18 31 0.00000000147139
Gossypium hirsutum A12 4 CH_ghi_542 8 9 0.000277754
Gossypium hirsutum D01 4 CH_ghi_74 22 31 0.0000000000000148336
Glycine max Gm12 4 CH_gma_99 11 11 0.00000000228485
Helianthus annuus HanXRQChr02 4 CH_han_282 12 17 0.000000331209
Helianthus annuus HanXRQChr11 4 CH_han_283 12 17 0.000000331209
Helianthus annuus HanXRQChr02 4 CH_han_408 9 11 0.0000181872
Helianthus annuus HanXRQChr10 4 CH_han_77 17 21 0.000000000000212238
Helianthus annuus HanXRQChr10 4 CH_han_79 18 24 0.000000000000245143
Lotus japonicus Contig00318 4 CH_lja_6 29 32 8.01636e-27
Lonicera japonica GWHAAZE00000002 4 CH_lonja_48 30 52 1.14488e-20
Micromonas commoda Chr_01 4 CH_mco_5 25 80 0.0000436923
Manihot esculenta Chromosome09 4 CH_mes_418 9 14 0.000743218
Medicago truncatula chr8 4 CH_mtr_743 17 77 0.00076578
Nelumbo nucifera scaffold020 4 CH_nnu_273 11 25 0.000326434
Petunia axillaris Peaxi162Scf00299 4 CH_pax_275 9 14 0.000254726
Salvia bowleyana GWHASIU00000002 4 CH_sbo_441 17 78 0.000399244
Sechium edule Contig00297 4 CH_sed_24 25 34 3.86717e-17
Sequoiadendron giganteum chr6 4 CH_sgi_1308 7 9 0.000558599
Solanum pennellii Spenn-ch06 4 CH_spe_289 18 75 0.0000462216
Solanum tuberosum ST4.03ch06 4 CH_stu_312 25 80 0.00000980562
Solanum tuberosum ST4.03ch01 4 CH_stu_566 18 52 0.000506922
Selenicereus undatus Scaffold_33676 4 CH_sun_14 14 14 0.00000000000018722
Selenicereus undatus Scaffold_19641 4 CH_sun_16 13 13 0.00000000000316387
Selenicereus undatus Scaffold_18573 4 CH_sun_27 15 22 0.00000000126694
Selenicereus undatus Scaffold_33673 4 CH_sun_33 11 12 0.0000000102357
Selenicereus undatus Scaffold_2055 4 CH_sun_62 8 8 0.00000432312
Utricularia gibba unitig_747 4 CH_ugi_56 19 58 0.0000570575

Available child term results

Ontology identifier Description Number of clusters
GO:0000112 nucleotide-excision repair factor 3 complex 2
GO:0000118 histone deacetylase complex 4
GO:0000123 histone acetyltransferase complex 2
GO:0000124 SAGA complex 10
GO:0000126 transcription factor TFIIIB complex 18
GO:0000127 transcription factor TFIIIC complex 66
GO:0000145 exocyst 110
GO:0000151 ubiquitin ligase complex 2
GO:0000159 protein phosphatase type 2A complex 8
GO:0000176 nuclear exosome (RNase complex) 2
GO:0000178 exosome (RNase complex) 10
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 34
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 20
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 22
GO:0000311 plastid large ribosomal subunit 4
GO:0000312 plastid small ribosomal subunit 10
GO:0000347 THO complex 8
GO:0000408 EKC/KEOPS complex 32
GO:0000418 RNA polymerase IV complex 8
GO:0000419 RNA polymerase V complex 6
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0000439 transcription factor TFIIH core complex 12
GO:0000445 THO complex part of transcription export complex 2
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0000786 nucleosome 162
GO:0000796 condensin complex 36
GO:0000808 origin recognition complex 8
GO:0000811 GINS complex 8
GO:0000812 Swr1 complex 4
GO:0000813 ESCRT I complex 2
GO:0000814 ESCRT II complex 20
GO:0000818 nuclear MIS12/MIND complex 2
GO:0000931 gamma-tubulin large complex 4
GO:0000938 GARP complex 30
GO:0000940 outer kinetochore 4
GO:0000974 Prp19 complex 14
GO:0001534 radial spoke 4
GO:0005643 nuclear pore 32
GO:0005655 nucleolar ribonuclease P complex 30
GO:0005656 nuclear pre-replicative complex 2
GO:0005662 DNA replication factor A complex 4
GO:0005664 nuclear origin of replication recognition complex 16
GO:0005665 RNA polymerase II, core complex 2
GO:0005666 RNA polymerase III complex 14
GO:0005667 transcription regulator complex 4
GO:0005669 transcription factor TFIID complex 28
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 10
GO:0005677 chromatin silencing complex 8
GO:0005680 anaphase-promoting complex 22
GO:0005681 spliceosomal complex 42
GO:0005682 U5 snRNP 4
GO:0005685 U1 snRNP 4
GO:0005688 U6 snRNP 2
GO:0005689 U12-type spliceosomal complex 14
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 4
GO:0005736 RNA polymerase I complex 2
GO:0005742 mitochondrial outer membrane translocase complex 8
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 12
GO:0005747 mitochondrial respiratory chain complex I 6
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 2
GO:0005750 mitochondrial respiratory chain complex III 2
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core 6
GO:0005762 mitochondrial large ribosomal subunit 8
GO:0005763 mitochondrial small ribosomal subunit 14
GO:0005784 Sec61 translocon complex 8
GO:0005785 signal recognition particle receptor complex 12
GO:0005787 signal peptidase complex 18
GO:0005838 proteasome regulatory particle 10
GO:0005839 proteasome core complex 2
GO:0005845 mRNA cap binding complex 10
GO:0005846 nuclear cap binding complex 6
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex 24
GO:0005848 mRNA cleavage stimulating factor complex 16
GO:0005849 mRNA cleavage factor complex 8
GO:0005852 eukaryotic translation initiation factor 3 complex 14
GO:0005854 nascent polypeptide-associated complex 34
GO:0005885 Arp2/3 protein complex 2
GO:0005953 CAAX-protein geranylgeranyltransferase complex 2
GO:0005956 protein kinase CK2 complex 4
GO:0005960 glycine cleavage complex 10
GO:0008250 oligosaccharyltransferase complex 6
GO:0008278 cohesin complex 20
GO:0008290 F-actin capping protein complex 16
GO:0008352 katanin complex 2
GO:0008622 epsilon DNA polymerase complex 38
GO:0009317 acetyl-CoA carboxylase complex 8
GO:0009329 acetate CoA-transferase complex 6
GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex 2
GO:0009341 beta-galactosidase complex 6
GO:0009344 nitrite reductase complex [NAD(P)H] 6
GO:0009358 polyphosphate kinase complex 2
GO:0009360 DNA polymerase III complex 6
GO:0009512 cytochrome b6f complex 6
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009521 photosystem 8
GO:0009522 photosystem I 8
GO:0009523 photosystem II 14
GO:0009538 photosystem I reaction center 4
GO:0009539 photosystem II reaction center 16
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009782 photosystem I antenna complex 2
GO:0009783 photosystem II antenna complex 6
GO:0009921 auxin efflux carrier complex 6
GO:0009923 fatty acid elongase complex 6
GO:0010006 Toc complex 2
GO:0010170 glucose-1-phosphate adenylyltransferase complex 2
GO:0010240 plastid pyruvate dehydrogenase complex 10
GO:0010330 cellulose synthase complex 16
GO:0010368 chloroplast isoamylase complex 2
GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) 2
GO:0015934 large ribosomal subunit 14
GO:0015935 small ribosomal subunit 18
GO:0016035 zeta DNA polymerase complex 16
GO:0016272 prefoldin complex 8
GO:0016281 eukaryotic translation initiation factor 4F complex 2
GO:0016442 RISC complex 4
GO:0016459 myosin complex 22
GO:0016469 proton-transporting two-sector ATPase complex 2
GO:0016471 vacuolar proton-transporting V-type ATPase complex 4
GO:0016514 SWI/SNF complex 8
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016592 mediator complex 24
GO:0016593 Cdc73/Paf1 complex 6
GO:0016602 CCAAT-binding factor complex 42
GO:0017053 transcription repressor complex 16
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0017119 Golgi transport complex 14
GO:0018444 translation release factor complex 12
GO:0019005 SCF ubiquitin ligase complex 2
GO:0019008 molybdopterin synthase complex 2
GO:0019773 proteasome core complex, alpha-subunit complex 12
GO:0022625 cytosolic large ribosomal subunit 6
GO:0022627 cytosolic small ribosomal subunit 10
GO:0030008 TRAPP complex 10
GO:0030014 CCR4-NOT complex 20
GO:0030015 CCR4-NOT core complex 56
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0030117 membrane coat 18
GO:0030121 AP-1 adaptor complex 4
GO:0030122 AP-2 adaptor complex 6
GO:0030123 AP-3 adaptor complex 16
GO:0030126 COPI vesicle coat 8
GO:0030127 COPII vesicle coat 16
GO:0030132 clathrin coat of coated pit 8
GO:0030286 dynein complex 2
GO:0030289 protein phosphatase 4 complex 4
GO:0030677 ribonuclease P complex 12
GO:0030686 90S preribosome 6
GO:0030688 preribosome, small subunit precursor 2
GO:0030880 RNA polymerase complex 2
GO:0030896 checkpoint clamp complex 20
GO:0030906 retromer, cargo-selective complex 8
GO:0030915 Smc5-Smc6 complex 28
GO:0030992 intraciliary transport particle B 2
GO:0031011 Ino80 complex 18
GO:0031080 nuclear pore outer ring 2
GO:0031083 BLOC-1 complex 10
GO:0031201 SNARE complex 6
GO:0031213 RSF complex 28
GO:0031262 Ndc80 complex 14
GO:0031380 nuclear RNA-directed RNA polymerase complex 2
GO:0031390 Ctf18 RFC-like complex 18
GO:0031415 NatA complex 8
GO:0031417 NatC complex 6
GO:0031422 RecQ family helicase-topoisomerase III complex 14
GO:0031428 box C/D RNP complex 16
GO:0031461 cullin-RING ubiquitin ligase complex 6
GO:0031463 Cul3-RING ubiquitin ligase complex 6
GO:0031515 tRNA (m1A) methyltransferase complex 4
GO:0031519 PcG protein complex 8
GO:0031588 nucleotide-activated protein kinase complex 2
GO:0031597 cytosolic proteasome complex 10
GO:0031897 Tic complex 10
GO:0031931 TORC1 complex 26
GO:0031932 TORC2 complex 2
GO:0032039 integrator complex 44
GO:0032040 small-subunit processome 16
GO:0032299 ribonuclease H2 complex 10
GO:0032300 mismatch repair complex 26
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 24
GO:0032783 super elongation complex 6
GO:0032993 protein-DNA complex 2
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex 10
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 4
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 2
GO:0033179 proton-transporting V-type ATPase, V0 domain 24
GO:0033186 CAF-1 complex 2
GO:0033263 CORVET complex 4
GO:0033588 elongator holoenzyme complex 6
GO:0033597 mitotic checkpoint complex 8
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 18
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 2
GO:0034457 Mpp10 complex 24
GO:0034663 endoplasmic reticulum chaperone complex 2
GO:0034693 U11/U12 snRNP 6
GO:0034705 potassium channel complex 4
GO:0034998 oligosaccharyltransferase I complex 2
GO:0035060 brahma complex 4
GO:0035098 ESC/E(Z) complex 2
GO:0035101 FACT complex 74
GO:0035102 PRC1 complex 14
GO:0035145 exon-exon junction complex 8
GO:0035267 NuA4 histone acetyltransferase complex 14
GO:0035658 Mon1-Ccz1 complex 12
GO:0036038 MKS complex 2
GO:0036396 RNA N6-methyladenosine methyltransferase complex 2
GO:0042555 MCM complex 4
GO:0042720 mitochondrial inner membrane peptidase complex 8
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 20
GO:0042729 DASH complex 2
GO:0042765 GPI-anchor transamidase complex 4
GO:0042788 polysomal ribosome 4
GO:0043033 isoamylase complex 4
GO:0043190 ATP-binding cassette (ABC) transporter complex 8
GO:0043240 Fanconi anaemia nuclear complex 8
GO:0043564 Ku70:Ku80 complex 16
GO:0043601 nuclear replisome 2
GO:0043625 delta DNA polymerase complex 10
GO:0044391 ribosomal subunit 10
GO:0044568 secondary cell wall cellulose synthase complex 16
GO:0044611 nuclear pore inner ring 4
GO:0045025 mitochondrial degradosome 2
GO:0045252 oxoglutarate dehydrogenase complex 2
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 34
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 12
GO:0045271 respiratory chain complex I 6
GO:0045273 respiratory chain complex II 2
GO:0045298 tubulin complex 4
GO:0046540 U4/U6 x U5 tri-snRNP complex 14
GO:0046695 SLIK (SAGA-like) complex 8
GO:0048188 Set1C/COMPASS complex 6
GO:0048476 Holliday junction resolvase complex 12
GO:0048500 signal recognition particle 10
GO:0055029 nuclear DNA-directed RNA polymerase complex 2
GO:0055087 Ski complex 6
GO:0061927 TOC-TIC supercomplex I 2
GO:0070449 elongin complex 16
GO:0070461 SAGA-type complex 2
GO:0070531 BRCA1-A complex 16
GO:0070652 HAUS complex 18
GO:0070772 PAS complex 16
GO:0070939 Dsl1/NZR complex 2
GO:0071006 U2-type catalytic step 1 spliceosome 2
GO:0071013 catalytic step 2 spliceosome 10
GO:0071203 WASH complex 6
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e 2
GO:0071818 BAT3 complex 2
GO:0071821 FANCM-MHF complex 6
GO:0072546 EMC complex 20
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 4
GO:0080085 signal recognition particle, chloroplast targeting 4
GO:0089701 U2AF complex 36
GO:0090577 RNA polymerase IV transcription regulator complex 2
GO:0090730 Las1 complex 16
GO:0097255 R2TP complex 18
GO:0097361 CIA complex 4
GO:0097550 transcription preinitiation complex 2
GO:0098796 membrane protein complex 8
GO:0098798 mitochondrial protein-containing complex 64
GO:0098800 inner mitochondrial membrane protein complex 4
GO:0099023 vesicle tethering complex 4
GO:0101031 chaperone complex 4
GO:0140513 nuclear protein-containing complex 6
GO:0140535 intracellular protein-containing complex 4
GO:1902494 catalytic complex 2
GO:1902495 transmembrane transporter complex 2
GO:1904423 dehydrodolichyl diphosphate synthase complex 12
GO:1905202 methylcrotonoyl-CoA carboxylase complex 2
GO:1990071 TRAPPII protein complex 16
GO:1990112 RQC complex 2
GO:1990124 messenger ribonucleoprotein complex 2
GO:1990234 transferase complex 2
GO:1990316 Atg1/ULK1 kinase complex 10
GO:1990745 EARP complex 26
GO:1990879 CST complex 2
GO:1990904 ribonucleoprotein complex 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001