Functional clusters

Information

  • Type Gene Ontology
  • Description intracellular protein-containing complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 8 3 CH_cav_307 9 49 0.0002177
Simmondsia chinensis GWHAASQ00000004 3 CH_sci_189 5 7 0.000178189
Corylus avellana 8 4 CH_cav_307 9 49 0.0002177
Simmondsia chinensis GWHAASQ00000004 4 CH_sci_189 5 7 0.000178189

Available child term results

Ontology identifier Description Number of clusters
GO:0000123 histone acetyltransferase complex 2
GO:0000124 SAGA complex 10
GO:0000151 ubiquitin ligase complex 2
GO:0000159 protein phosphatase type 2A complex 8
GO:0000418 RNA polymerase IV complex 8
GO:0000419 RNA polymerase V complex 6
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0005665 RNA polymerase II, core complex 2
GO:0005666 RNA polymerase III complex 14
GO:0005669 transcription factor TFIID complex 28
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 10
GO:0005680 anaphase-promoting complex 22
GO:0005736 RNA polymerase I complex 2
GO:0005838 proteasome regulatory particle 10
GO:0005839 proteasome core complex 2
GO:0005845 mRNA cap binding complex 10
GO:0005846 nuclear cap binding complex 6
GO:0005953 CAAX-protein geranylgeranyltransferase complex 2
GO:0005956 protein kinase CK2 complex 4
GO:0008622 epsilon DNA polymerase complex 38
GO:0009360 DNA polymerase III complex 6
GO:0010170 glucose-1-phosphate adenylyltransferase complex 2
GO:0016035 zeta DNA polymerase complex 16
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016593 Cdc73/Paf1 complex 6
GO:0019005 SCF ubiquitin ligase complex 2
GO:0019773 proteasome core complex, alpha-subunit complex 12
GO:0030008 TRAPP complex 10
GO:0030014 CCR4-NOT complex 20
GO:0030015 CCR4-NOT core complex 56
GO:0030289 protein phosphatase 4 complex 4
GO:0030880 RNA polymerase complex 2
GO:0031380 nuclear RNA-directed RNA polymerase complex 2
GO:0031415 NatA complex 8
GO:0031417 NatC complex 6
GO:0031461 cullin-RING ubiquitin ligase complex 6
GO:0031463 Cul3-RING ubiquitin ligase complex 6
GO:0031588 nucleotide-activated protein kinase complex 2
GO:0031597 cytosolic proteasome complex 10
GO:0031931 TORC1 complex 26
GO:0031932 TORC2 complex 2
GO:0032299 ribonuclease H2 complex 10
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 24
GO:0033588 elongator holoenzyme complex 6
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 18
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 2
GO:0035102 PRC1 complex 14
GO:0035267 NuA4 histone acetyltransferase complex 14
GO:0043625 delta DNA polymerase complex 10
GO:0046695 SLIK (SAGA-like) complex 8
GO:0055029 nuclear DNA-directed RNA polymerase complex 2
GO:0070461 SAGA-type complex 2
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 4
GO:1990071 TRAPPII protein complex 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001