Functional clusters
Information
- Type Gene Ontology
- Description transcription factor TFIIIC complex
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 3 | CH_aar_245 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_330 | 2 | 2 | 0.000660044 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 3 | CH_arhy_224 | 4 | 6 | 0.00000000467874 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_120 | 5 | 47 | 0.00000000992962 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 3 | CH_atr_296 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC09 | 3 | CH_bca_264 | 3 | 3 | 0.000000249498 |
| Brassica napus | A01 | 3 | CH_bna_646 | 2 | 2 | 0.00066822 |
| Brassica napus | C01 | 3 | CH_bna_647 | 2 | 2 | 0.00066822 |
| Brassica rapa | A01 | 3 | CH_bra_239 | 2 | 2 | 0.000257588 |
| Capsicum annuum | PGAv.1.6.scaffold397 | 3 | CH_can_465 | 2 | 2 | 0.000826105 |
| Corylus avellana | 9 | 3 | CH_cav_421 | 2 | 2 | 0.000766695 |
| Coffea canephora | chr6 | 3 | CH_ccan_334 | 2 | 5 | 0.000383296 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_338 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_126 | 3 | 3 | 0.000000160382 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_768 | 2 | 2 | 0.000175582 |
| Eutrema salsugineum | scaffold_16 | 3 | CH_esa_241 | 2 | 2 | 0.000456899 |
| Gossypium hirsutum | A08 | 3 | CH_ghi_704 | 2 | 2 | 0.000961256 |
| Lupinus albus | Lalb_Chr10 | 3 | CH_lal_273 | 3 | 22 | 0.000127051 |
| Lupinus albus | Lalb_Chr05 | 3 | CH_lal_408 | 2 | 2 | 0.000787236 |
| Magnolia biondii | Chr06 | 3 | CH_mbi_300 | 3 | 9 | 0.00000297091 |
| Petunia axillaris | Peaxi162Scf00006 | 3 | CH_pax_85 | 3 | 3 | 0.00000025988 |
| Papaver somniferum | NC_039362.1 | 3 | CH_pso_246 | 3 | 3 | 0.000000125626 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_732 | 2 | 2 | 0.000597979 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_733 | 2 | 2 | 0.000597979 |
| Salvia bowleyana | GWHASIU00000001 | 3 | CH_sbo_346 | 3 | 18 | 0.0000885626 |
| Simmondsia chinensis | GWHAASQ00000013 | 3 | CH_sci_277 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_175 | 6 | 9 | 4.79032e-16 |
| Schrenkiella parvula | ch5-1 | 3 | CH_spa_191 | 2 | 2 | 0.000472404 |
| Selenicereus undatus | Scaffold_33679 | 3 | CH_sun_112 | 3 | 27 | 0.0000925266 |
| Trochodendron aralioides | group1 | 3 | CH_tar_462 | 2 | 2 | 0.000600366 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_11 | 6 | 6 | 4.36695e-18 |
| Zea mays | 5 | 3 | CH_zma_3 | 14 | 22 | 8.06984e-36 |
| Zea mays | 5 | 3 | CH_zma_35 | 5 | 6 | 0.0000000000438144 |
| Aethionema arabicum | LG-4 | 4 | CH_aar_245 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_5 | 4 | CH_aly_330 | 2 | 2 | 0.000660044 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 4 | CH_arhy_224 | 4 | 6 | 0.00000000467874 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_120 | 5 | 47 | 0.00000000992962 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 4 | CH_atr_296 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC09 | 4 | CH_bca_264 | 3 | 3 | 0.000000249498 |
| Brassica napus | A01 | 4 | CH_bna_646 | 2 | 2 | 0.00066822 |
| Brassica napus | C01 | 4 | CH_bna_647 | 2 | 2 | 0.00066822 |
| Brassica rapa | A01 | 4 | CH_bra_239 | 2 | 2 | 0.000257588 |
| Capsicum annuum | PGAv.1.6.scaffold397 | 4 | CH_can_465 | 2 | 2 | 0.000826105 |
| Corylus avellana | 9 | 4 | CH_cav_421 | 2 | 2 | 0.000766695 |
| Coffea canephora | chr6 | 4 | CH_ccan_334 | 2 | 5 | 0.000383296 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_338 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_126 | 3 | 3 | 0.000000160382 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_768 | 2 | 2 | 0.000175582 |
| Eutrema salsugineum | scaffold_16 | 4 | CH_esa_241 | 2 | 2 | 0.000456899 |
| Gossypium hirsutum | A08 | 4 | CH_ghi_704 | 2 | 2 | 0.000961256 |
| Lupinus albus | Lalb_Chr10 | 4 | CH_lal_273 | 3 | 22 | 0.000127051 |
| Lupinus albus | Lalb_Chr05 | 4 | CH_lal_408 | 2 | 2 | 0.000787236 |
| Magnolia biondii | Chr06 | 4 | CH_mbi_300 | 3 | 9 | 0.00000297091 |
| Petunia axillaris | Peaxi162Scf00006 | 4 | CH_pax_85 | 3 | 3 | 0.00000025988 |
| Papaver somniferum | NC_039362.1 | 4 | CH_pso_246 | 3 | 3 | 0.000000125626 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_732 | 2 | 2 | 0.000597979 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_733 | 2 | 2 | 0.000597979 |
| Salvia bowleyana | GWHASIU00000001 | 4 | CH_sbo_346 | 3 | 18 | 0.0000885626 |
| Simmondsia chinensis | GWHAASQ00000013 | 4 | CH_sci_277 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_175 | 6 | 9 | 4.79032e-16 |
| Schrenkiella parvula | ch5-1 | 4 | CH_spa_191 | 2 | 2 | 0.000472404 |
| Selenicereus undatus | Scaffold_33679 | 4 | CH_sun_112 | 3 | 27 | 0.0000925266 |
| Trochodendron aralioides | group1 | 4 | CH_tar_462 | 2 | 2 | 0.000600366 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_11 | 6 | 6 | 4.36695e-18 |
| Zea mays | 5 | 4 | CH_zma_3 | 14 | 22 | 8.06984e-36 |
| Zea mays | 5 | 4 | CH_zma_35 | 5 | 6 | 0.0000000000438144 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |