Functional clusters

Information

  • Type Gene Ontology
  • Description ribonucleoprotein complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza sativa ssp. japonica chr07 3 CH_osa_324 5 6 0.000134845
Solanum tuberosum ST4.03ch01 3 CH_stu_399 5 5 0.0000586367
Oryza sativa ssp. japonica chr07 4 CH_osa_324 5 6 0.000134845
Solanum tuberosum ST4.03ch01 4 CH_stu_399 5 5 0.0000586367

Available child term results

Ontology identifier Description Number of clusters
GO:0000311 plastid large ribosomal subunit 4
GO:0000312 plastid small ribosomal subunit 10
GO:0005655 nucleolar ribonuclease P complex 30
GO:0005681 spliceosomal complex 42
GO:0005682 U5 snRNP 4
GO:0005685 U1 snRNP 4
GO:0005688 U6 snRNP 2
GO:0005689 U12-type spliceosomal complex 14
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 4
GO:0005762 mitochondrial large ribosomal subunit 8
GO:0005763 mitochondrial small ribosomal subunit 14
GO:0015934 large ribosomal subunit 14
GO:0015935 small ribosomal subunit 18
GO:0016442 RISC complex 4
GO:0022625 cytosolic large ribosomal subunit 6
GO:0022627 cytosolic small ribosomal subunit 10
GO:0030677 ribonuclease P complex 12
GO:0030686 90S preribosome 6
GO:0030688 preribosome, small subunit precursor 2
GO:0031428 box C/D RNP complex 16
GO:0032040 small-subunit processome 16
GO:0034457 Mpp10 complex 24
GO:0034693 U11/U12 snRNP 6
GO:0042788 polysomal ribosome 4
GO:0044391 ribosomal subunit 10
GO:0046540 U4/U6 x U5 tri-snRNP complex 14
GO:0048500 signal recognition particle 10
GO:0071006 U2-type catalytic step 1 spliceosome 2
GO:0071013 catalytic step 2 spliceosome 10
GO:0080085 signal recognition particle, chloroplast targeting 4
GO:1990124 messenger ribonucleoprotein complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001