Functional clusters

Information

  • Type Gene Ontology
  • Description catalytic complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Selenicereus undatus Scaffold_33675 3 CH_sun_174 5 6 0.000309208
Selenicereus undatus Scaffold_33675 4 CH_sun_174 5 6 0.000309208

Available child term results

Ontology identifier Description Number of clusters
GO:0000118 histone deacetylase complex 4
GO:0000123 histone acetyltransferase complex 2
GO:0000124 SAGA complex 10
GO:0000151 ubiquitin ligase complex 2
GO:0000159 protein phosphatase type 2A complex 8
GO:0000176 nuclear exosome (RNase complex) 2
GO:0000178 exosome (RNase complex) 10
GO:0000418 RNA polymerase IV complex 8
GO:0000419 RNA polymerase V complex 6
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0000812 Swr1 complex 4
GO:0005655 nucleolar ribonuclease P complex 30
GO:0005665 RNA polymerase II, core complex 2
GO:0005666 RNA polymerase III complex 14
GO:0005669 transcription factor TFIID complex 28
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 10
GO:0005680 anaphase-promoting complex 22
GO:0005736 RNA polymerase I complex 2
GO:0005747 mitochondrial respiratory chain complex I 6
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 2
GO:0005750 mitochondrial respiratory chain complex III 2
GO:0005787 signal peptidase complex 18
GO:0005838 proteasome regulatory particle 10
GO:0005839 proteasome core complex 2
GO:0005953 CAAX-protein geranylgeranyltransferase complex 2
GO:0005960 glycine cleavage complex 10
GO:0008250 oligosaccharyltransferase complex 6
GO:0008622 epsilon DNA polymerase complex 38
GO:0009317 acetyl-CoA carboxylase complex 8
GO:0009329 acetate CoA-transferase complex 6
GO:0009341 beta-galactosidase complex 6
GO:0009358 polyphosphate kinase complex 2
GO:0009360 DNA polymerase III complex 6
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009923 fatty acid elongase complex 6
GO:0010170 glucose-1-phosphate adenylyltransferase complex 2
GO:0010240 plastid pyruvate dehydrogenase complex 10
GO:0010330 cellulose synthase complex 16
GO:0010368 chloroplast isoamylase complex 2
GO:0016035 zeta DNA polymerase complex 16
GO:0016514 SWI/SNF complex 8
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016593 Cdc73/Paf1 complex 6
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0019005 SCF ubiquitin ligase complex 2
GO:0019773 proteasome core complex, alpha-subunit complex 12
GO:0030286 dynein complex 2
GO:0030289 protein phosphatase 4 complex 4
GO:0030677 ribonuclease P complex 12
GO:0030880 RNA polymerase complex 2
GO:0030915 Smc5-Smc6 complex 28
GO:0031011 Ino80 complex 18
GO:0031213 RSF complex 28
GO:0031380 nuclear RNA-directed RNA polymerase complex 2
GO:0031415 NatA complex 8
GO:0031417 NatC complex 6
GO:0031461 cullin-RING ubiquitin ligase complex 6
GO:0031463 Cul3-RING ubiquitin ligase complex 6
GO:0031515 tRNA (m1A) methyltransferase complex 4
GO:0031588 nucleotide-activated protein kinase complex 2
GO:0031597 cytosolic proteasome complex 10
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 24
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 2
GO:0034998 oligosaccharyltransferase I complex 2
GO:0035060 brahma complex 4
GO:0035098 ESC/E(Z) complex 2
GO:0035102 PRC1 complex 14
GO:0035267 NuA4 histone acetyltransferase complex 14
GO:0036396 RNA N6-methyladenosine methyltransferase complex 2
GO:0042765 GPI-anchor transamidase complex 4
GO:0043033 isoamylase complex 4
GO:0043625 delta DNA polymerase complex 10
GO:0044568 secondary cell wall cellulose synthase complex 16
GO:0045025 mitochondrial degradosome 2
GO:0045252 oxoglutarate dehydrogenase complex 2
GO:0045271 respiratory chain complex I 6
GO:0046695 SLIK (SAGA-like) complex 8
GO:0048188 Set1C/COMPASS complex 6
GO:0048476 Holliday junction resolvase complex 12
GO:0055029 nuclear DNA-directed RNA polymerase complex 2
GO:0070461 SAGA-type complex 2
GO:0070772 PAS complex 16
GO:0071006 U2-type catalytic step 1 spliceosome 2
GO:0071013 catalytic step 2 spliceosome 10
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 4
GO:0090730 Las1 complex 16
GO:1904423 dehydrodolichyl diphosphate synthase complex 12
GO:1905202 methylcrotonoyl-CoA carboxylase complex 2
GO:1990234 transferase complex 2
GO:1990316 Atg1/ULK1 kinase complex 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001