Functional clusters

Information

  • Type Gene Ontology
  • Description membrane protein complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica rapa Brapa_scaffold_140 3 CH_bra_27 15 39 0.00000000000242366
Capsicum annuum PGAv.1.6.scaffold219 3 CH_can_154 9 18 0.0000000586324
Lonicera japonica GWHAAZE00000002 3 CH_lonja_45 23 80 1.70294e-21
Sechium edule LG13 3 CH_sed_8 26 77 2.81899e-22
Brassica rapa Brapa_scaffold_140 4 CH_bra_27 15 39 0.00000000000242366
Capsicum annuum PGAv.1.6.scaffold219 4 CH_can_154 9 18 0.0000000586324
Lonicera japonica GWHAAZE00000002 4 CH_lonja_45 23 80 1.70294e-21
Sechium edule LG13 4 CH_sed_8 26 77 2.81899e-22

Available child term results

Ontology identifier Description Number of clusters
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 34
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 20
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 22
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0000813 ESCRT I complex 2
GO:0000814 ESCRT II complex 20
GO:0005742 mitochondrial outer membrane translocase complex 8
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 12
GO:0005747 mitochondrial respiratory chain complex I 6
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 2
GO:0005750 mitochondrial respiratory chain complex III 2
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core 6
GO:0005784 Sec61 translocon complex 8
GO:0005785 signal recognition particle receptor complex 12
GO:0005787 signal peptidase complex 18
GO:0008250 oligosaccharyltransferase complex 6
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009521 photosystem 8
GO:0009522 photosystem I 8
GO:0009523 photosystem II 14
GO:0009538 photosystem I reaction center 4
GO:0009539 photosystem II reaction center 16
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009782 photosystem I antenna complex 2
GO:0009783 photosystem II antenna complex 6
GO:0009921 auxin efflux carrier complex 6
GO:0009923 fatty acid elongase complex 6
GO:0010006 Toc complex 2
GO:0016469 proton-transporting two-sector ATPase complex 2
GO:0016471 vacuolar proton-transporting V-type ATPase complex 4
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0030117 membrane coat 18
GO:0030121 AP-1 adaptor complex 4
GO:0030122 AP-2 adaptor complex 6
GO:0030123 AP-3 adaptor complex 16
GO:0030126 COPI vesicle coat 8
GO:0030127 COPII vesicle coat 16
GO:0030132 clathrin coat of coated pit 8
GO:0030906 retromer, cargo-selective complex 8
GO:0031201 SNARE complex 6
GO:0031897 Tic complex 10
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 4
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 2
GO:0033179 proton-transporting V-type ATPase, V0 domain 24
GO:0034705 potassium channel complex 4
GO:0034998 oligosaccharyltransferase I complex 2
GO:0042720 mitochondrial inner membrane peptidase complex 8
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 20
GO:0042765 GPI-anchor transamidase complex 4
GO:0043190 ATP-binding cassette (ABC) transporter complex 8
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 34
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 12
GO:0045271 respiratory chain complex I 6
GO:0045273 respiratory chain complex II 2
GO:0070772 PAS complex 16
GO:0072546 EMC complex 20
GO:0098800 inner mitochondrial membrane protein complex 4
GO:1902495 transmembrane transporter complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001