Functional clusters
Information
- Type Gene Ontology
- Description CCR4-NOT core complex
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | sc-23 | 3 | CH_aar_273 | 2 | 2 | 0.000912326 |
| Aethionema arabicum | LG-11 | 3 | CH_aar_274 | 2 | 2 | 0.000912326 |
| Actinidia chinensis | Lachesis_group23 | 3 | CH_ach_17 | 5 | 5 | 0.0000000000042964 |
| Actinidia chinensis | Lachesis_group23 | 3 | CH_ach_2 | 9 | 11 | 1.84662e-23 |
| Arabidopsis lyrata | scaffold_6 | 3 | CH_aly_370 | 2 | 2 | 0.000990066 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 3 | CH_amhyb_217 | 2 | 2 | 0.000841751 |
| Brassica napus | C02 | 3 | CH_bna_282 | 3 | 3 | 0.0000033825 |
| Camellia sinensis var. sinensis | Chr6 | 3 | CH_camsi_361 | 3 | 3 | 0.00000214476 |
| Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_71 | 5 | 5 | 0.000000000000205214 |
| Capsicum annuum | PGAv.1.6.scaffold78 | 3 | CH_can_434 | 2 | 2 | 0.000495663 |
| Corylus avellana | 1 | 3 | CH_cav_55 | 4 | 4 | 0.0000000000202829 |
| Ceratophyllum demersum | 9 | 3 | CH_cde_21 | 4 | 4 | 0.000000000731682 |
| Ceratophyllum demersum | 2 | 3 | CH_cde_61 | 3 | 3 | 0.00000205855 |
| Gossypium hirsutum | D11 | 3 | CH_ghi_302 | 3 | 4 | 0.00000239528 |
| Helianthus annuus | HanXRQChr05 | 3 | CH_han_323 | 3 | 3 | 0.00000125437 |
| Helianthus annuus | HanXRQChr16 | 3 | CH_han_324 | 3 | 3 | 0.00000125437 |
| Hydrangea macrophylla | Hma1.2p1_0341F.1 | 3 | CH_hma_310 | 2 | 2 | 0.000666519 |
| Malus domestica | Chr07 | 3 | CH_mdo_87 | 4 | 4 | 0.000000000020614 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_215 | 3 | 3 | 0.00000405411 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_1337 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_660 | 3 | 4 | 0.000000284764 |
| Sapria himalayana | scaffold36_5715340 | 3 | CH_shi_34 | 5 | 17 | 0.000000000392087 |
| Sapria himalayana | scaffold16_12220143 | 3 | CH_shi_4 | 6 | 6 | 1.27121e-17 |
| Solanum lycopersicum | SL4.0ch05 | 3 | CH_sly_305 | 3 | 4 | 0.0000235549 |
| Solanum lycopersicum | SL4.0ch07 | 3 | CH_sly_56 | 6 | 8 | 0.0000000000000170016 |
| Solanum tuberosum | ST4.03ch07 | 3 | CH_stu_112 | 5 | 6 | 0.0000000000131867 |
| Theobroma cacao | Chromosome_3 | 3 | CH_tca_396 | 2 | 2 | 0.000732386 |
| Vigna mungo | CM024077.1 | 3 | CH_vmu_337 | 2 | 2 | 0.000969211 |
| Aethionema arabicum | sc-23 | 4 | CH_aar_273 | 2 | 2 | 0.000912326 |
| Aethionema arabicum | LG-11 | 4 | CH_aar_274 | 2 | 2 | 0.000912326 |
| Actinidia chinensis | Lachesis_group23 | 4 | CH_ach_17 | 5 | 5 | 0.0000000000042964 |
| Actinidia chinensis | Lachesis_group23 | 4 | CH_ach_2 | 9 | 11 | 1.84662e-23 |
| Arabidopsis lyrata | scaffold_6 | 4 | CH_aly_370 | 2 | 2 | 0.000990066 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 4 | CH_amhyb_217 | 2 | 2 | 0.000841751 |
| Brassica napus | C02 | 4 | CH_bna_282 | 3 | 3 | 0.0000033825 |
| Camellia sinensis var. sinensis | Chr6 | 4 | CH_camsi_361 | 3 | 3 | 0.00000214476 |
| Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_71 | 5 | 5 | 0.000000000000205214 |
| Capsicum annuum | PGAv.1.6.scaffold78 | 4 | CH_can_434 | 2 | 2 | 0.000495663 |
| Corylus avellana | 1 | 4 | CH_cav_55 | 4 | 4 | 0.0000000000202829 |
| Ceratophyllum demersum | 9 | 4 | CH_cde_21 | 4 | 4 | 0.000000000731682 |
| Ceratophyllum demersum | 2 | 4 | CH_cde_61 | 3 | 3 | 0.00000205855 |
| Gossypium hirsutum | D11 | 4 | CH_ghi_302 | 3 | 4 | 0.00000239528 |
| Helianthus annuus | HanXRQChr05 | 4 | CH_han_323 | 3 | 3 | 0.00000125437 |
| Helianthus annuus | HanXRQChr16 | 4 | CH_han_324 | 3 | 3 | 0.00000125437 |
| Hydrangea macrophylla | Hma1.2p1_0341F.1 | 4 | CH_hma_310 | 2 | 2 | 0.000666519 |
| Malus domestica | Chr07 | 4 | CH_mdo_87 | 4 | 4 | 0.000000000020614 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_215 | 3 | 3 | 0.00000405411 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_1337 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_660 | 3 | 4 | 0.000000284764 |
| Sapria himalayana | scaffold36_5715340 | 4 | CH_shi_34 | 5 | 17 | 0.000000000392087 |
| Sapria himalayana | scaffold16_12220143 | 4 | CH_shi_4 | 6 | 6 | 1.27121e-17 |
| Solanum lycopersicum | SL4.0ch05 | 4 | CH_sly_305 | 3 | 4 | 0.0000235549 |
| Solanum lycopersicum | SL4.0ch07 | 4 | CH_sly_56 | 6 | 8 | 0.0000000000000170016 |
| Solanum tuberosum | ST4.03ch07 | 4 | CH_stu_112 | 5 | 6 | 0.0000000000131867 |
| Theobroma cacao | Chromosome_3 | 4 | CH_tca_396 | 2 | 2 | 0.000732386 |
| Vigna mungo | CM024077.1 | 4 | CH_vmu_337 | 2 | 2 | 0.000969211 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |